Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vium7923g00002 | ATGTCTTCCCCTAATAAGAAATCTGAACCCCATAACAACACACCCGATGACGCCACCCCCGACGACTCCACCCCCGACGACTCCACCCCCGACAACTCCACTCCCGATGACTCCACACCGGACAATGCCACGCCCGACAATGCCACGCCCGATAAATCAAATGGATCACATAAAGGTTCCTCATCGTCGTCCACTCATTCACCACCGACCAAAGAGGCACATAAATCGCTGTCGCATGAAAAGCTGACAGAGTCAACGAACGAGGATGGCACCAATAAAGCAGCATTGGGAGCTGGGATCGGAGTTGGGTTTGTCATTCTGGTGTTGCTCGTTGTGTGTTTGGTTTGGTGTTGCAGGAGGAAGAAGCGAAAGCAGAATAAAAACTACTATTACGCATCTCCTTCTAAAGGAAAAGCAGCTAACAATTATTACAACACTGGACAACAATCTCTTCCTCATTGGCAACCAGGAGCTGGTCCTCATATGGGGGAGCATGTTGTGAGGGTTCAACAACAGCAACAACAACAGGGGATGGGGATGGGGATGGGGATGCAGATGGGGATGCAGATGGGAATGGGAATGGGTCCTCCTAGTGGTGGCTGGGGAACATCACATCCTCAAATGAGCAGTGGTGATATGAGCTCTAATTATTCAGCGGGTATGGGTTCCTCATCGCCAGGCCTTCCTCTCACGCTCAAGAGTGGTACCTTCACTTATGAGGAGCTAGCAGCTGCCACCAAAGGTTTTGCCAATGACCAGATTATTGGACAAGGTGGCTTTGGTTATGTCCATAAGGGAGTTTTGCCTAATGGAAAGGAAGTGGCTGTTAAGAGTCTAAAAGCAGGTAGTGGACAAGGAGAACGCGAGTTCCAAGCTGAGATTGAAATCATCAGTCGAGTTCATCATCGTCATCTTGTGTCACTTGTTGGATATTGCATTTGTGGAGGCCAAAGAATGCTGGTCTATGAATTTGTTCCCAACTCAACTTTGGAACATCACCTTCATGGTAAAGGTATGCCTACCATGGATTGGCCTACTAGAATGCGAATTGCGATTGGATCTGCCAAAGGGCTTGCCTACCTTCACGAAGATTGTAGCCCTCGAATTATCCATCGCGACATTAAAGCTTCTAATGTCCTTCTTGATCTAAGCTTTGAAGCCAAGGTGTCTGATTTTGGACTTGCAAAGTTGACCTCTGATACTAATACACATGTCTCAACTCGTGTCATGGGAACATTCGGGTACTTGGCACCAGAATACGCATCAAGTGGAAAATTGACAGAGAAGTCTGATGTTTTCTCATTTGGGGTCATGCTTTTGGAACTCATAACAGGGAAACGACCTGTAGATCCAACAAATGCCATGGAAGACAGTTTAGTGGATTGGGCTCGACCACTCCTGAATAAAGGATTGGAGGATGGCAACTTTGGAATGTTGGTGGATCCATTTTTGGAAGGTAACTACAATGCCCAGGAAATGACAAGAATGGCAGCTTGTGCAGCTGCAAGCATTCGTCATTCTGCTAAGAAGCGTTCAAAAATGAGCCAGATTGTGAGAGCACTGGAAGGAGATGTCTCATTGGAAGACTTAAAAGATGGAATGAAACTTACAACAGGGAATGGGAATAGTGGTGCCTACCCTTCTTCGTCTGGAAGCTCAGAATATGATACCATGCAATACAATGCTGATATGGCAAAGTTCAGACAGGCAATAATGTCGAGCCAAGAATTTAATGACAGTGGTGAGCTTTCCAGTAAGGAGATCGGTTATCATTAG | 1776 | 0.4651 | MSSPNKKSEPHNNTPDDATPDDSTPDDSTPDNSTPDDSTPDNATPDNATPDKSNGSHKGSSSSSTHSPPTKEAHKSLSHEKLTESTNEDGTNKAALGAGIGVGFVILVLLVVCLVWCCRRKKRKQNKNYYYASPSKGKAANNYYNTGQQSLPHWQPGAGPHMGEHVVRVQQQQQQQGMGMGMGMQMGMQMGMGMGPPSGGWGTSHPQMSSGDMSSNYSAGMGSSSPGLPLTLKSGTFTYEELAAATKGFANDQIIGQGGFGYVHKGVLPNGKEVAVKSLKAGSGQGEREFQAEIEIISRVHHRHLVSLVGYCICGGQRMLVYEFVPNSTLEHHLHGKGMPTMDWPTRMRIAIGSAKGLAYLHEDCSPRIIHRDIKASNVLLDLSFEAKVSDFGLAKLTSDTNTHVSTRVMGTFGYLAPEYASSGKLTEKSDVFSFGVMLLELITGKRPVDPTNAMEDSLVDWARPLLNKGLEDGNFGMLVDPFLEGNYNAQEMTRMAACAAASIRHSAKKRSKMSQIVRALEGDVSLEDLKDGMKLTTGNGNSGAYPSSSGSSEYDTMQYNADMAKFRQAIMSSQEFNDSGELSSKEIGYH | 591 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vium7923g00002 | 591 | MobiDBLite | consensus disorder prediction | 25 | 71 | - | - | |
Vium7923g00002 | 591 | MobiDBLite | consensus disorder prediction | 1 | 91 | - | - | |
Vium7923g00002 | 591 | ProSitePatterns | Protein kinases ATP-binding region signature. | 255 | 277 | IPR017441 | GO:0005524 | |
Vium7923g00002 | 591 | FunFam | Proline-rich receptor-like protein kinase PERK1 | 325 | 532 | - | - | |
Vium7923g00002 | 591 | Gene3D | Transferase(Phosphotransferase) domain 1 | 325 | 535 | - | - | |
Vium7923g00002 | 591 | Gene3D | Phosphorylase Kinase; domain 1 | 224 | 324 | - | - | |
Vium7923g00002 | 591 | SMART | serkin_6 | 249 | 484 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vium7923g00002 | 591 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 369 | 381 | IPR008271 | GO:0004672|GO:0006468 | |
Vium7923g00002 | 591 | MobiDBLite | consensus disorder prediction | 202 | 220 | - | - | |
Vium7923g00002 | 591 | MobiDBLite | consensus disorder prediction | 72 | 87 | - | - | |
Vium7923g00002 | 591 | MobiDBLite | consensus disorder prediction | 199 | 220 | - | - | |
Vium7923g00002 | 591 | SUPERFAMILY | Protein kinase-like (PK-like) | 228 | 521 | IPR011009 | - | |
Vium7923g00002 | 591 | ProSiteProfiles | Protein kinase domain profile. | 249 | 509 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vium7923g00002 | 591 | Pfam | Protein tyrosine and serine/threonine kinase | 252 | 452 | IPR001245 | GO:0004672|GO:0006468 | |
Vium7923g00002 | 591 | PANTHER | PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 | 104 | 571 | IPR047117 | - | |
Vium7923g00002 | 591 | FunFam | proline-rich receptor-like protein kinase PERK1 | 227 | 324 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vium7923g00002 | Vium-Chr7923 | 810 | 4751 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vium7923g00002 | 18 | 584 | Trihelix Transcription Factor Family | AT1G70460 | 44.298 | 7.68e-145 | 434 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
PK | RLK-Pelle_PERK-1 | Vium7923g00002 | PK_Tyr_Ser-Thr | 4.4e-46 | CL0016 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vium7923g00002 | - | - | gmx:100805872 | 800.431 |