Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7923g00002 ATGTCTTCCCCTAATAAGAAATCTGAACCCCATAACAACACACCCGATGACGCCACCCCCGACGACTCCACCCCCGACGACTCCACCCCCGACAACTCCACTCCCGATGACTCCACACCGGACAATGCCACGCCCGACAATGCCACGCCCGATAAATCAAATGGATCACATAAAGGTTCCTCATCGTCGTCCACTCATTCACCACCGACCAAAGAGGCACATAAATCGCTGTCGCATGAAAAGCTGACAGAGTCAACGAACGAGGATGGCACCAATAAAGCAGCATTGGGAGCTGGGATCGGAGTTGGGTTTGTCATTCTGGTGTTGCTCGTTGTGTGTTTGGTTTGGTGTTGCAGGAGGAAGAAGCGAAAGCAGAATAAAAACTACTATTACGCATCTCCTTCTAAAGGAAAAGCAGCTAACAATTATTACAACACTGGACAACAATCTCTTCCTCATTGGCAACCAGGAGCTGGTCCTCATATGGGGGAGCATGTTGTGAGGGTTCAACAACAGCAACAACAACAGGGGATGGGGATGGGGATGGGGATGCAGATGGGGATGCAGATGGGAATGGGAATGGGTCCTCCTAGTGGTGGCTGGGGAACATCACATCCTCAAATGAGCAGTGGTGATATGAGCTCTAATTATTCAGCGGGTATGGGTTCCTCATCGCCAGGCCTTCCTCTCACGCTCAAGAGTGGTACCTTCACTTATGAGGAGCTAGCAGCTGCCACCAAAGGTTTTGCCAATGACCAGATTATTGGACAAGGTGGCTTTGGTTATGTCCATAAGGGAGTTTTGCCTAATGGAAAGGAAGTGGCTGTTAAGAGTCTAAAAGCAGGTAGTGGACAAGGAGAACGCGAGTTCCAAGCTGAGATTGAAATCATCAGTCGAGTTCATCATCGTCATCTTGTGTCACTTGTTGGATATTGCATTTGTGGAGGCCAAAGAATGCTGGTCTATGAATTTGTTCCCAACTCAACTTTGGAACATCACCTTCATGGTAAAGGTATGCCTACCATGGATTGGCCTACTAGAATGCGAATTGCGATTGGATCTGCCAAAGGGCTTGCCTACCTTCACGAAGATTGTAGCCCTCGAATTATCCATCGCGACATTAAAGCTTCTAATGTCCTTCTTGATCTAAGCTTTGAAGCCAAGGTGTCTGATTTTGGACTTGCAAAGTTGACCTCTGATACTAATACACATGTCTCAACTCGTGTCATGGGAACATTCGGGTACTTGGCACCAGAATACGCATCAAGTGGAAAATTGACAGAGAAGTCTGATGTTTTCTCATTTGGGGTCATGCTTTTGGAACTCATAACAGGGAAACGACCTGTAGATCCAACAAATGCCATGGAAGACAGTTTAGTGGATTGGGCTCGACCACTCCTGAATAAAGGATTGGAGGATGGCAACTTTGGAATGTTGGTGGATCCATTTTTGGAAGGTAACTACAATGCCCAGGAAATGACAAGAATGGCAGCTTGTGCAGCTGCAAGCATTCGTCATTCTGCTAAGAAGCGTTCAAAAATGAGCCAGATTGTGAGAGCACTGGAAGGAGATGTCTCATTGGAAGACTTAAAAGATGGAATGAAACTTACAACAGGGAATGGGAATAGTGGTGCCTACCCTTCTTCGTCTGGAAGCTCAGAATATGATACCATGCAATACAATGCTGATATGGCAAAGTTCAGACAGGCAATAATGTCGAGCCAAGAATTTAATGACAGTGGTGAGCTTTCCAGTAAGGAGATCGGTTATCATTAG 1776 0.4651 MSSPNKKSEPHNNTPDDATPDDSTPDDSTPDNSTPDDSTPDNATPDNATPDKSNGSHKGSSSSSTHSPPTKEAHKSLSHEKLTESTNEDGTNKAALGAGIGVGFVILVLLVVCLVWCCRRKKRKQNKNYYYASPSKGKAANNYYNTGQQSLPHWQPGAGPHMGEHVVRVQQQQQQQGMGMGMGMQMGMQMGMGMGPPSGGWGTSHPQMSSGDMSSNYSAGMGSSSPGLPLTLKSGTFTYEELAAATKGFANDQIIGQGGFGYVHKGVLPNGKEVAVKSLKAGSGQGEREFQAEIEIISRVHHRHLVSLVGYCICGGQRMLVYEFVPNSTLEHHLHGKGMPTMDWPTRMRIAIGSAKGLAYLHEDCSPRIIHRDIKASNVLLDLSFEAKVSDFGLAKLTSDTNTHVSTRVMGTFGYLAPEYASSGKLTEKSDVFSFGVMLLELITGKRPVDPTNAMEDSLVDWARPLLNKGLEDGNFGMLVDPFLEGNYNAQEMTRMAACAAASIRHSAKKRSKMSQIVRALEGDVSLEDLKDGMKLTTGNGNSGAYPSSSGSSEYDTMQYNADMAKFRQAIMSSQEFNDSGELSSKEIGYH 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7923g00002 591 MobiDBLite consensus disorder prediction 25 71 - -
Vium7923g00002 591 MobiDBLite consensus disorder prediction 1 91 - -
Vium7923g00002 591 ProSitePatterns Protein kinases ATP-binding region signature. 255 277 IPR017441 GO:0005524
Vium7923g00002 591 FunFam Proline-rich receptor-like protein kinase PERK1 325 532 - -
Vium7923g00002 591 Gene3D Transferase(Phosphotransferase) domain 1 325 535 - -
Vium7923g00002 591 Gene3D Phosphorylase Kinase; domain 1 224 324 - -
Vium7923g00002 591 SMART serkin_6 249 484 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium7923g00002 591 ProSitePatterns Serine/Threonine protein kinases active-site signature. 369 381 IPR008271 GO:0004672|GO:0006468
Vium7923g00002 591 MobiDBLite consensus disorder prediction 202 220 - -
Vium7923g00002 591 MobiDBLite consensus disorder prediction 72 87 - -
Vium7923g00002 591 MobiDBLite consensus disorder prediction 199 220 - -
Vium7923g00002 591 SUPERFAMILY Protein kinase-like (PK-like) 228 521 IPR011009 -
Vium7923g00002 591 ProSiteProfiles Protein kinase domain profile. 249 509 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium7923g00002 591 Pfam Protein tyrosine and serine/threonine kinase 252 452 IPR001245 GO:0004672|GO:0006468
Vium7923g00002 591 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 104 571 IPR047117 -
Vium7923g00002 591 FunFam proline-rich receptor-like protein kinase PERK1 227 324 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7923g00002 Vium-Chr7923 810 4751 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7923g00002 18 584 Trihelix Transcription Factor Family AT1G70460 44.298 7.68e-145 434
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Vium7923g00002 PK_Tyr_Ser-Thr 4.4e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7923g00002 - - gmx:100805872 800.431