Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7922g00002 ATGGATCGTTCTGCGATGACTGTTGGGCCAGGAATGGATATGCCAATCATGCATGACAGTGATAGGTATGAGCTGGTCCGTGATATTGGGTCGGGGAATTTTGGGGTGGCTAGGCTCATGAGGGACAAGCACACTGAGGAGCTTGTTGCTGTGAAGTATATTGAGAGAGGTGAAAAGATAGATGAAAATGTACGAAGGGAAATTATAAATCATAGATCATTGAGGCATCCCAATATTGTCAGGTTCAAGGAGGTCATACTAACCCCTACACATTTGGCTATTGTGATGGAATATGCCTCTGGAGGAGAATTATTTGAACGGATTTGCAAAGCAGGAAGATTTGGTGAAGATGAGGCACGCTTCTTCTTCCAACAACTTATATCAGGGGTTAGCTTCTGTCATGCAATGCAAGTATGCCATCGTGACTTAAAGTTGGAGAACACATTGTTGGATGGTAGTCCAGCTCCTCGTTTGAAGATTTGTGATTTTGGGTATTCGAAGTCCTCTGTACTACATTCACAACCAAAATCTACAGTCGGTACCCCTGCATACATTGCTCCTGAAGTTTTGCTTAAGAAAGAATATGATGGCAAGATTGCAGATGTGTGGTCCTGTGGGGTGACCTTATACGTCATGTTGGTAGGTGCATATCCTTTTGAGGATCCAGAGGAACCTGCAAATTTCCGAAAGACAATTCAGAGGATTTTGAAAGTCCAGTACTCAATTCCTGATTATGTTCATATATCTCCCGAATGTCGTCATCTAATCTCAAGGATCTTCGTTGCAGATCCTGCACAGAGAATAACTATTCCTGATATTCGAAGCCACGAGTGGTTTTTGACGAACCTTCCGGCAGATCTGATGGTGGACAGCACAATGAGCAACCAGTTTGAGGAGCCTCATCAGCCAATGCAGAGCGTTGAAGAGATCATGCAGATAATTAGAGAGGCTACAATTCCTGGAGCCAAAACTCAGTCTCTCAACCAGTATCTCACTGGTAGCTTGGACATGGATGATGATGACATGGACGAGGACCCAGAGACAGATTCTGATCTTGATATTGATAGCAGTGGAGAAATAGTTTATGCAATGTAA 1095 0.4347 MDRSAMTVGPGMDMPIMHDSDRYELVRDIGSGNFGVARLMRDKHTEELVAVKYIERGEKIDENVRREIINHRSLRHPNIVRFKEVILTPTHLAIVMEYASGGELFERICKAGRFGEDEARFFFQQLISGVSFCHAMQVCHRDLKLENTLLDGSPAPRLKICDFGYSKSSVLHSQPKSTVGTPAYIAPEVLLKKEYDGKIADVWSCGVTLYVMLVGAYPFEDPEEPANFRKTIQRILKVQYSIPDYVHISPECRHLISRIFVADPAQRITIPDIRSHEWFLTNLPADLMVDSTMSNQFEEPHQPMQSVEEIMQIIREATIPGAKTQSLNQYLTGSLDMDDDDMDEDPETDSDLDIDSSGEIVYAM 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7922g00002 364 SMART serkin_6 23 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium7922g00002 364 FunFam Serine/threonine-protein kinase SRK2E 99 287 - -
Vium7922g00002 364 ProSitePatterns Serine/Threonine protein kinases active-site signature. 138 150 IPR008271 GO:0004672|GO:0006468
Vium7922g00002 364 MobiDBLite consensus disorder prediction 336 354 - -
Vium7922g00002 364 FunFam Serine/threonine-protein kinase SRK2E 14 98 - -
Vium7922g00002 364 ProSiteProfiles Protein kinase domain profile. 23 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium7922g00002 364 MobiDBLite consensus disorder prediction 333 357 - -
Vium7922g00002 364 Pfam Protein kinase domain 23 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium7922g00002 364 SUPERFAMILY Protein kinase-like (PK-like) 15 305 IPR011009 -
Vium7922g00002 364 PANTHER SERINE/THREONINE KINASE 22 309 - -
Vium7922g00002 364 Gene3D Transferase(Phosphotransferase) domain 1 99 286 - -
Vium7922g00002 364 Gene3D Phosphorylase Kinase; domain 1 1 98 - -
Vium7922g00002 364 ProSitePatterns Protein kinases ATP-binding region signature. 29 52 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7922g00002 Vium-Chr7922 1599 5959 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7922g00002 22 290 CBL-interacting serine-threonine protein kinases AT5G25110 44.681 1.83e-70 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Vium7922g00002 Pkinase 1.2e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7922g00002 K14498 - gmx:100804702 674.855