Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7922g00001 GATCTGTGCAAGAGCATCAACCCTGATGAGGCTGTCGCTCATGGTGCAGCTGTTCAGGCTGCTTTGCTGAATGAAGGTATGAAGAATGTTCCAAACTTGGAGCTACTGGATGTTACACCTCTATCCCTTGGTATAAGCGCAAGGCCAGATGTCATGAGTGTGGTCATTCCCAGGAACACTACCATTCCCGTGAGCAAGACAAAAGTATTCCACACAACAATCGATAACGAATATAGCGCGTCGATTAAAGTTTATGAGGGTGAGAGAGCAAGAGCCAGTGATAACAATTTGTTAGGTTCTTTTGTTCTTTCTGGATTTCCTCCTGCTCCTCGTGGCCATCCTTTGGATGTATTCTTTGCCATAGATTCAAATGGTATGTTAACTGTTTCAGCTGAGGAAAAAACCACTGGAAATAAGAATGAGATTATCATAACCAATGACAAAGAGAGACTGTCTCCTGAAGAAATTATGAGAATGATTCAAGAAGCTGAGAATTTTCGGGCGGCAGATAAGAAATTCCTCAGAAAGTCCAAAGCAATTAATTCTTTGGATAACTACGTTTACAAGATGAATAATGCTTTGAAAAAGAAAGATATGATTTCTAAACTTAGCTCATCGACAAGGTTGAGTATTTGTTTGGCAATTCAGAAGGGTACAAAATTGCTGGATGGTAAAAATCAGAATGAGGAAGCATATGTATTTGAGGATTATCTGAAGAAGCTTGAGAGCCTCTATGAAAATATAATAGGCAAGAATGGGTAG 762 0.3976 DLCKSINPDEAVAHGAAVQAALLNEGMKNVPNLELLDVTPLSLGISARPDVMSVVIPRNTTIPVSKTKVFHTTIDNEYSASIKVYEGERARASDNNLLGSFVLSGFPPAPRGHPLDVFFAIDSNGMLTVSAEEKTTGNKNEIIITNDKERLSPEEIMRMIQEAENFRAADKKFLRKSKAINSLDNYVYKMNNALKKKDMISKLSSSTRLSICLAIQKGTKLLDGKNQNEEAYVFEDYLKKLESLYENIIGKNG 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7922g00001 253 PANTHER HEAT SHOCK PROTEIN 70KDA 2 204 IPR013126 GO:0005524|GO:0140662
Vium7922g00001 253 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 29 184 IPR029047 -
Vium7922g00001 253 Gene3D - 181 252 IPR029048 -
Vium7922g00001 253 FunFam Heat shock 70 kDa protein 26 180 - -
Vium7922g00001 253 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 28 180 IPR029047 -
Vium7922g00001 253 Pfam Hsp70 protein 2 249 IPR013126 GO:0005524|GO:0140662
Vium7922g00001 253 PRINTS 70kDa heat shock protein signature 112 128 - -
Vium7922g00001 253 PRINTS 70kDa heat shock protein signature 6 26 - -
Vium7922g00001 253 PRINTS 70kDa heat shock protein signature 32 51 - -
Vium7922g00001 253 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 179 251 IPR029048 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7922g00001 Vium-Chr7922 61 822 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7922g00001 1 251 Calmodulin-binding Proteins AT3G12580 57.312 5.38e-87 269