Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7918g00001 ATGGCAGTCACATTCTACGACCTTAGCTCTGCCTCTGGGTTGAAGAAGCTTGATGAGTACCTTCTCTCACGCAGTTACATCACCGGGTACCAAGCTTCAAAGGATGATCTCACTGTCTATGCAGCTTTGCCAACTGCTCCATCAACTGAGTATGTCAATGTGTCTAGGTGGTTCAAGCACATTGATGCTTTGTTGAGAATCTCTGGTGTTTCTGGTGAGGGATCTGGTGTCACTGTTAAGGGATCTCTTGTTACTGAGCCTGTTGCAACTCCCCCAGCTGCTGATACAAAGGCTGCTGCTGCTGCTGCTGAGGATGACGATGATGATGATGATGTGGATTTGTTTGGTGAAGAGACAGAGGAAGAGAAGAAGGCAGCGGAGGAACGGGCAGCTGCAGCGAAGGCATCTGGAAAAAAGAAAGAATCCGGGAAGTCATCTGTTCTGATGGATGTGAAACCATGGGATGATGAAACGGACATGAAGAAGCTCGAGGAAGCAGTGAGATCTGTTAGCATGGAAGGCTTGCTTTGGGGTGCAT 538 0.4851 MAVTFYDLSSASGLKKLDEYLLSRSYITGYQASKDDLTVYAALPTAPSTEYVNVSRWFKHIDALLRISGVSGEGSGVTVKGSLVTEPVATPPAADTKAAAAAAEDDDDDDDVDLFGEETEEEKKAAEERAAAAKASGKKKESGKSSVLMDVKPWDDETDMKKLEEAVRSVSMEGLLWGA 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7918g00001 179 SUPERFAMILY GST C-terminal domain-like 11 67 IPR036282 -
Vium7918g00001 179 Coils Coil 116 136 - -
Vium7918g00001 179 CDD EF1B 142 179 IPR014038 GO:0003746|GO:0006414
Vium7918g00001 179 Pfam EF-1 guanine nucleotide exchange domain 146 178 IPR014038 GO:0003746|GO:0006414
Vium7918g00001 179 Gene3D - 4 80 - -
Vium7918g00001 179 FunFam Elongation factor 1-beta 1 like 138 179 - -
Vium7918g00001 179 MobiDBLite consensus disorder prediction 86 156 - -
Vium7918g00001 179 Gene3D - 137 179 IPR014717 -
Vium7918g00001 179 MobiDBLite consensus disorder prediction 118 156 - -
Vium7918g00001 179 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 1. 108 116 IPR001326 GO:0003746|GO:0005853|GO:0006414
Vium7918g00001 179 PANTHER EF-HAND AND COILED-COIL DOMAIN-CONTAINING FAMILY MEMBER 8 179 - -
Vium7918g00001 179 MobiDBLite consensus disorder prediction 102 117 - -
Vium7918g00001 179 FunFam Elongation factor 1-delta 1 3 78 - -
Vium7918g00001 179 SUPERFAMILY eEF-1beta-like 141 178 IPR036219 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7918g00001 Vium-Chr7918 486 1868 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7918g00001 5 179 Eukaryotic Initiation Factors Gene Family AT2G18110 76.836 2.04e-75 224
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7918g00001 K03232 - gmx:100777627 231.491