Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7917g00004 ATGGATCTGGCAAAAAGCAAAGGTAGTGGTGAAGTTTTGGATCATGTTGATGAAAGGGTGGGTGAGGATTTGAACCAATTGGTTGAAGGAAATGCAATTGATGCAGGAGGTGGACATAGGTTGGATGAAAGAGTTAGTGTAAGTGGGGAAGATGAGACTACAGACCAGATGTGTAATGGTCTTGGTTTGAATGTGGAGCTAAAGGAGGGGCTGCAAGAAGTTAATGATCAGAACCTGGTTGGACCTCAAGAAATTAATGATACATTACATGGGGTTGATCAAGGAACCAGTTATAGTTCAAGAAATTTGGTTAGTGGGGAAGTACCTGAGACTTGTGTTGTAATAGATCCTTCCGCACAGATTGATTGTGTCAGTGGAGAAAATAGGAAATTGGAAGCAAAACCTAATGATTCAGGCTTGAGCAAGGTGTCCAAGAAAGTGACAAAAGGGGTGTCTGACATAGATAAAAATTCATGTGTGATTGATATAAACCGTGGCAGCTGCGACGGTTTTAGTGAAAATCTGGAAGGTGAATTGATTTGTAGGATTTGCCATCTGGCCTCTGGGCAACCATTAGAAGCAGAAGCTGTTGGCACTGTAAGTAGTGCTACAACTACGAATACAGATTTGATTCAGCTTGGTTGTGCTTGTAAAGATGAATTAGGCATTGCTCACAGTCATTGTGCTGAGGCATGGTTCAAGATTAAAGGAAACAGGTTGTGTGAAATATGTGGTGAGACTGCAAAAAATGTTTCGGACGTTGCTGATCATGGATTTATTGAAGAATGGAATGATACTAGATTCATGGGCAATGATGATACCTCATCCAGAAGATTTGGTGGATGCTGGCGTGGACAACCATTTTGTAACTTCTTAATGGCATGCCTGGTTATAGCGTTTGTTCTACCTTGGTTCTTTCGTGTAAATATGTTCTAG 936 0.4113 MDLAKSKGSGEVLDHVDERVGEDLNQLVEGNAIDAGGGHRLDERVSVSGEDETTDQMCNGLGLNVELKEGLQEVNDQNLVGPQEINDTLHGVDQGTSYSSRNLVSGEVPETCVVIDPSAQIDCVSGENRKLEAKPNDSGLSKVSKKVTKGVSDIDKNSCVIDINRGSCDGFSENLEGELICRICHLASGQPLEAEAVGTVSSATTTNTDLIQLGCACKDELGIAHSHCAEAWFKIKGNRLCEICGETAKNVSDVADHGFIEEWNDTRFMGNDDTSSRRFGGCWRGQPFCNFLMACLVIAFVLPWFFRVNMF 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7917g00004 311 SMART ringv_2 180 245 IPR011016 GO:0008270
Vium7917g00004 311 Pfam RING-variant domain 204 244 IPR011016 GO:0008270
Vium7917g00004 311 SUPERFAMILY RING/U-box 179 247 - -
Vium7917g00004 311 ProSiteProfiles Zinc finger RING-CH-type profile. 173 251 IPR011016 GO:0008270
Vium7917g00004 311 PANTHER ZINC FINGER, RING-CH-TYPE 88 311 - -
Vium7917g00004 311 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 167 256 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7917g00004 Vium-Chr7917 1660 5603 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7917g00004 161 310 C3H Transcription Factor Family AT5G05830 36.709 8.12e-27 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7917g00004 - - gmx:100791129 544.273