Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7917g00003 ATGGATCTGGCAAAAAGCAAAGGTAGTGGTGAAGTTTTGGATCATGTTGATGAAAGGGTGGGTGAGGATTTGAACCAATTGGTTGAAGGAAATGCAATTGATGCAGGAGGTGGACATAGGTTGGATGAAAGAGTTAGTGTAAGTGGGGAAGATGAGACTACAGACCAGATGTGTAATGGTCTTGGTTTGAATGTGGAGCTAAAGGAGGGGCTGCAAGAAGTTAATGATCAGAACCTGGTTGGACCTCAAGAAATTAATGATACATTACATGGGGTTGATCAAGGAACCAGTTATAGTTCAAGAAATTTGGTTAGTGGGGAAGTACCTGAGACTTGTGTTGTAATAGATCCTTCCGCACAGATTGATTGTGTCAGTGGAGAAAATAGGAAATTGGAAGCAAAACCTAATGATTCAGGCTTGAGCAAGGTGTCCAAGAAAGTGACAAAAGGGGTGTCTGACATAGATAAAAATTCATGTGTGATTGATATAAACCGTGGCAGCTGCGACGGTTTTAGTGAAAATCTGGAAGGTGAATTGATTTGTAGGATTTGCCATCTGGCCTCTGGGCAACCATTAGAAGCAGAAGCTGTTGGCACTGTAAGTAGTGCTACAACTACGAATACAGATTTGATTCAGCTTGGTTGTGCTTGTAAAGATGAATTAGGCATTGCTCACAGTCATTGTGCTGAGGCATGGTTCAAGATTAAAGGAAACAGTTGGTTATTGCATGTAGCTCGTTGCCGTTTCACTTTTCGCTGGTTACATCGCTAA 771 0.4176 MDLAKSKGSGEVLDHVDERVGEDLNQLVEGNAIDAGGGHRLDERVSVSGEDETTDQMCNGLGLNVELKEGLQEVNDQNLVGPQEINDTLHGVDQGTSYSSRNLVSGEVPETCVVIDPSAQIDCVSGENRKLEAKPNDSGLSKVSKKVTKGVSDIDKNSCVIDINRGSCDGFSENLEGELICRICHLASGQPLEAEAVGTVSSATTTNTDLIQLGCACKDELGIAHSHCAEAWFKIKGNSWLLHVARCRFTFRWLHR 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7917g00003 256 PANTHER ZINC FINGER, RING-CH-TYPE 86 239 - -
Vium7917g00003 256 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 175 255 IPR013083 -
Vium7917g00003 256 SMART ringv_2 180 239 IPR011016 GO:0008270
Vium7917g00003 256 ProSiteProfiles Zinc finger RING-CH-type profile. 173 254 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7917g00003 Vium-Chr7917 1658 4923 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7917g00003 161 238 C3H Transcription Factor Family AT5G05830 38.462 4.38e-10 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7917g00003 - - vra:106779758 447.203