Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7914g00001 TTTCGCCTCCAAAATCTGATCCTAGATTATAACTTCTTTAGTGGCACCATTCCTGCTTCTTTGGGCAACTTGAGTGAACTCACAGAGATTTCTCTCAGTCATAACCAGCTTAGAGGACCTATCCCAAATGAAATTGGAAGCCTTTATAGACTTAAGACGGTAGATTTTTCTAGTAATTCATTGAACGGAAGCTTGCCCGCCACTCTCTCTAATGTGTCCTCTCTCACTCTCTTGAATGTAGAGAACAACCACCTAGGTAATCAAATCCCAGAAGCCTTGGGCAGATTGCACAATCTATCTGTTCTGGTTCTGAGCAGAAACCAATTCAGTGGCCATATTCCTCAGAGTATTGGAAACATGTCAAAGCTTACACAGCTTGATTTGTCAATGAATAATCTCAGTGGAGAAATTCCAGCATCCTTTGAAGATCTGAGTGGTCTTAATTTCTTCAACGTTTCTCATAACAACCTCTCTGGTCCGGTTCCAGCCCTACTTGGGCATAAATTTAATTCAAGCTCATTTGTGGGAAATATTCAGCTATGTGGATATAGCCCTTCAACCCCATGTCCCTCGCCAGCTCCTTTTGTTTCACCTAAAGAAAAATCAGAAAACCATCGACACAATAAACTAGGCACCAAAGACATAATTCTCATAGTAGCAGGAGTGCTCCTTGTTGTCCTGGTAACACTTTGCTGCATTCTGCTATTCTGCCTGATCAGAAAAAGAACAGCATCGAATGCAGAGGGTGGCCAGGCCACAGGGAGAGCATCTGCATCTGCTGCCACGACAGAAAAAAGAGTCCCTCCTGTCGCAGGTGAAGCTGAAGCTGGTGGTGGTGAGGCCGGAGGTAAACTAGTCCACTTTGATGGACCATTGGCTTTTACAGCTGATGATCTCTTGTGTGCAACAGCAGAGATAATGGGAAAGAGTACGTATGGAACTGTTTACAAGGCTACATTAGAGGATGGAAGTCAAGCTGCAGTTAAACGATTGAGGGAAAAGATTACGAAAGGTCAAAAAGAATTCGAATCTGAAGTTAGTATTATAGGAAGAATTCGACACCCAAATCTTCTGGCATTGAGAGCCTATTACTTGGGACCCAAAGGAGAAAAGCTTCTAGTATTTGATTACATGCCTAAGGGAAGTCTTGCTTCTTTCCTACACGCTCGTGGGCCCGAAACAGCCATTGATTGGCCAACAAGGATGAAAATAGCGCAGGGAATGGCTCGTGGCTTGTTATACCTTCATTCCAATGAAAATATTATTCACGGAAACCTTACGTCCAGCAATGTGCTGCTGGATGAGTATACGAATGCTAAAATAGCTGATTTTGGCCTTTCTCGGTTGATGACAACTGCTGCTAATTCTAACGTGATTGCCACTGCTGGGGCATTGGGATACCGAGCACCTGAGCTCTCGAAGCTTAAGAAAGCCAACACAAAAACTGACGTATACAGTCTTGGTGTCATCTTGTTAGAACTCCTAACGGGGAAGCCACCTGGTGAGGCTTTGAATGGCGTGGATTTACCTCAGTGGGTTGCCTCCATTGTCAAAGAGGAGTGGACAAATGAAGTTTTCGATGTAGAGTTGATGAGAGATGCTTCAACATATGGCGACGAAATGCTGAACACGTTGAAGCTTGCTTTGCACTGTGTTGATCCTTCTCCATCAGCACGACCAGAAGTCCAGCAAGTCCTTCAGCAGCTTGAAGAGATTAGACCGGAGATATCAGCCAGTTCGGGTGACGATGGAGCCATCCCTTCCACCAGTGAATGA 1776 0.4454 FRLQNLILDYNFFSGTIPASLGNLSELTEISLSHNQLRGPIPNEIGSLYRLKTVDFSSNSLNGSLPATLSNVSSLTLLNVENNHLGNQIPEALGRLHNLSVLVLSRNQFSGHIPQSIGNMSKLTQLDLSMNNLSGEIPASFEDLSGLNFFNVSHNNLSGPVPALLGHKFNSSSFVGNIQLCGYSPSTPCPSPAPFVSPKEKSENHRHNKLGTKDIILIVAGVLLVVLVTLCCILLFCLIRKRTASNAEGGQATGRASASAATTEKRVPPVAGEAEAGGGEAGGKLVHFDGPLAFTADDLLCATAEIMGKSTYGTVYKATLEDGSQAAVKRLREKITKGQKEFESEVSIIGRIRHPNLLALRAYYLGPKGEKLLVFDYMPKGSLASFLHARGPETAIDWPTRMKIAQGMARGLLYLHSNENIIHGNLTSSNVLLDEYTNAKIADFGLSRLMTTAANSNVIATAGALGYRAPELSKLKKANTKTDVYSLGVILLELLTGKPPGEALNGVDLPQWVASIVKEEWTNEVFDVELMRDASTYGDEMLNTLKLALHCVDPSPSARPEVQQVLQQLEEIRPEISASSGDDGAIPSTSE 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7914g00001 591 MobiDBLite consensus disorder prediction 248 278 - -
Vium7914g00001 591 Pfam Protein tyrosine and serine/threonine kinase 304 569 IPR001245 GO:0004672|GO:0006468
Vium7914g00001 591 CDD STKc_IRAK 307 572 - -
Vium7914g00001 591 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 5 572 - -
Vium7914g00001 591 ProSiteProfiles Protein kinase domain profile. 301 576 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium7914g00001 591 Gene3D Ribonuclease Inhibitor 1 193 IPR032675 -
Vium7914g00001 591 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 70 189 - -
Vium7914g00001 591 FunFam Pollen receptor-like kinase 1 378 582 - -
Vium7914g00001 591 FunFam Leucine-rich repeat receptor-like protein kinase 286 377 - -
Vium7914g00001 591 MobiDBLite consensus disorder prediction 572 591 - -
Vium7914g00001 591 Gene3D Phosphorylase Kinase; domain 1 307 378 - -
Vium7914g00001 591 Pfam Leucine rich repeat 98 157 IPR001611 GO:0005515
Vium7914g00001 591 SUPERFAMILY Protein kinase-like (PK-like) 305 573 IPR011009 -
Vium7914g00001 591 Gene3D Transferase(Phosphotransferase) domain 1 379 583 - -
Vium7914g00001 591 SUPERFAMILY L domain-like 2 167 - -
Vium7914g00001 591 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 2 69 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7914g00001 Vium-Chr7914 4 2062 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7914g00001 3 574 Receptor kinase-like Gene Family AT3G51740 66.667 0.0 722
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vium7914g00001 PK_Tyr_Ser-Thr 2.3e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7914g00001 - - vum:124846103 1077.77