Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7908g00003 ATGGGAAGAGCACCTTGCTGTGACAAAGCAAACGTGAAGAAAGGTCCTTGGTCGCCAGAAGAAGATGCCAAACTCAAATCCTACATCGAACAGCACGGAACCGGAGGCAACTGGATCGCTTTGCCACAGAAGATTGGCCTCAAACGATGTGGCAAGAGTTGCCGTCTCAGGTGGCTAAACTACCTCCGCCCTAACATCAAGCACGGTGGCTTCTCTGAAGAAGAAGATAACATCATTTGCAGCCTCTACGTTAGCATTGGAAGCAGGTGGTCGGTGATTGCGGCACAATTGCCAGGAAGAACTGATAACGACATAAAGAACTACTGGAACACGAGGCTGAAGAAGAAGCTTTTAGGGAAGCACCGCAAGGAACTGCAGGCACGTAGCAAAGAAAACGGTGTCGTTAAGCAGGAGAACAATTCTTCACTCTTGCTTCAGGAAAACATTGTTCAACAACAGCCTTGTTGGCCACAGATTCCGGCGCCGCCACTTTCGCCGTACACAAGTCAAAATCCAAGTTTCAACGACCAAGACTCTATTAGAAAACTTCTAATCAAGCTTGGAGGGAGATTCTCCGATGATTATCAACCCATAGGGGTGAATGTTCAGTTTCCACAGGGTTCTCTCACATCAACACAACAAATTCAAGAGGAGCAAGTCCATGTTAGCTCTTCTGGGTGCATGAACTCTATTGGCAACTGCCAATTACAATTTGGTCAGAGTAATGAGTACTGTTCTGAGTTGGTGCAAGGAGAAGTGAGTTTCAGTTCCGCAGCTATTGGGGAAATGGTTTCTACTAATGATTATTCTCAAAGGTTATTAGGAGGGTTGGAGTTCTTGTATGGAGAGGAAATGATTAGCGATAAGATAATGGGTGGTTGTGCATCTTCATGTTGTGGGCAAAGTACTAATTGGGGCGAGACAAGTTCTTTGATTTATCCTCCTCTTGTTGCTTCGAGTTTCGAGGGTGTGAGGGAAGAGATGCCACGAGAAAATGCTTTTCAAGAGTTGAGCTACCCATAG 1023 0.4585 MGRAPCCDKANVKKGPWSPEEDAKLKSYIEQHGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEDNIICSLYVSIGSRWSVIAAQLPGRTDNDIKNYWNTRLKKKLLGKHRKELQARSKENGVVKQENNSSLLLQENIVQQQPCWPQIPAPPLSPYTSQNPSFNDQDSIRKLLIKLGGRFSDDYQPIGVNVQFPQGSLTSTQQIQEEQVHVSSSGCMNSIGNCQLQFGQSNEYCSELVQGEVSFSSAAIGEMVSTNDYSQRLLGGLEFLYGEEMISDKIMGGCASSCCGQSTNWGETSSLIYPPLVASSFEGVREEMPRENAFQELSYP 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7908g00003 340 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Vium7908g00003 340 Gene3D - 7 68 - -
Vium7908g00003 340 PANTHER OS09G0431300 PROTEIN 1 236 - -
Vium7908g00003 340 CDD SANT 71 113 IPR001005 -
Vium7908g00003 340 Gene3D - 70 143 - -
Vium7908g00003 340 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Vium7908g00003 340 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Vium7908g00003 340 SMART sant 13 64 IPR001005 -
Vium7908g00003 340 SMART sant 67 115 IPR001005 -
Vium7908g00003 340 FunFam Transcription factor RAX3 70 144 - -
Vium7908g00003 340 CDD SANT 16 62 IPR001005 -
Vium7908g00003 340 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Vium7908g00003 340 FunFam Transcription factor RAX3 7 68 - -
Vium7908g00003 340 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Vium7908g00003 340 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Vium7908g00003 340 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7908g00003 Vium-Chr7908 55123 56869 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7908g00003 1 186 MYB Transcription Factor Family AT3G49690 66.169 5.12e-88 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vium7908g00003 Myb_DNA-binding 2.3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7908g00003 K09422 - gmx:100790407 584.334