Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7903g00003 ATGTTAGTGAAAGACCACAATAGAGGGGATGGATCCAAGTCTCTGGCCTATACACTGGCGAGATGGAAAGAGTACAATGCTTGGCTTGAATCTAGCAATGAGGCTGAGAAAGCAGTTAGAAAAGTTCCTGCCAAAGGATCAAAGAAAGGGTGTATGAAAGGTAAAGGAGGGCCTGAGAACACACTCTGTAACTACAGAGGAGTTAGGCAAAGAACTTGGGGAAAATGGGTTGCTGAAATCCGGGAGCCAAACAGAGGGAGTAGGCTCTGGTTGGGTACTTTTTCCACTGCCATTAGTGCTGCTCTGGCTTATGATGAAGCAGCTAAGGCAATGTATGGTTCTGTTGCACGTCTTAACTTTCCCAACCTTGAAGTTTCAGCTTTATCTGAGGAATCATCAAGAAATTCACCAGCTGGTAGTCAATGTGGTTCTGCATTGGTGATATCAGAGAGTTCTGAATGTATGATATTTCCAAATAGCTCGGAGGGAGACAAAGCTAAGGATGATGACATGGAAGGCCTATCCTTATCCTTAAGTGTTAAACATGAGGTAGTGTAG 558 0.4409 MLVKDHNRGDGSKSLAYTLARWKEYNAWLESSNEAEKAVRKVPAKGSKKGCMKGKGGPENTLCNYRGVRQRTWGKWVAEIREPNRGSRLWLGTFSTAISAALAYDEAAKAMYGSVARLNFPNLEVSALSEESSRNSPAGSQCGSALVISESSECMIFPNSSEGDKAKDDDMEGLSLSLSVKHEVV 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7903g00003 185 Gene3D AP2/ERF domain 64 122 IPR036955 GO:0003700|GO:0006355
Vium7903g00003 185 CDD AP2 63 123 IPR001471 GO:0003700|GO:0006355
Vium7903g00003 185 FunFam Ethylene-responsive transcription factor 2 63 122 - -
Vium7903g00003 185 Pfam AP2 domain 63 113 IPR001471 GO:0003700|GO:0006355
Vium7903g00003 185 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 4 148 - -
Vium7903g00003 185 SUPERFAMILY DNA-binding domain 64 121 IPR016177 GO:0003677
Vium7903g00003 185 PRINTS Ethylene responsive element binding protein signature 87 103 IPR001471 GO:0003700|GO:0006355
Vium7903g00003 185 PRINTS Ethylene responsive element binding protein signature 65 76 IPR001471 GO:0003700|GO:0006355
Vium7903g00003 185 SMART rav1_2 64 127 IPR001471 GO:0003700|GO:0006355
Vium7903g00003 185 ProSiteProfiles AP2/ERF domain profile. 64 121 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7903g00003 Vium-Chr7903 19353 20888 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7903g00003 11 153 AP2-EREBP Transcription Factor Family AT2G40340 54.422 2.27e-50 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vium7903g00003 AP2 8e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7903g00003 - - gmx:100783729 300.441