Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7901g00020 ATGAAAATGGACATATACGAGCCATTTCAGCAAGTTGGCATGTGGGGTGACGCCTTTAAAGTTGATGGTGGCCTGAATTCAATTGCTTCCCCAATATTAATGGTTGACACTAATGTCGAGACCCAGTCTGAATATATTCCTCAAGAATCAAGAGAGCCTTCTGGAGCCGATCAAGAGACCACAGACAAAGATGCTAATAAGATGAGAAGACGTCTAGCTCAGAATAGAGAGGCTGCTCGGAAAAGTCGGTTGAGGAAAAAGGCGTATGTTAAACAGTTAGAATCAAGCCGCATGAAGCTCGTGCAATTGGAGCTGGAAATTGGGAAAGCAAGAAAGCAGGGTCTGTACATGGGCACTGCATTAGATGCCAGCTATATAGGATCAACATCAGAAACAATAAACCCAGTTATTGTTGCATTTGAAATTGAATATGGACAATGGGTTGAAGAGCAACATAGGCGGAATGAAGAGCTTAGACATGCATTTCAAACTCAAGCACCTGATGTTCAGCTGAATGCAGTGGTTCAGAGTGTCTTAAACCATTACTCAAATCTCTTCAGAATGAAAGCAGATGCTGCAAAGGCTGATGTTCTGTATTTACTCTCTGGTGTGTGGAAAGCATCAGTGGAGCGCATCTTCCTTTGGATTGGAGGGTCCCGTCCTTCACAGCTTCTAAACATTATCGTACCACAACTTGAGCCTTTGACTGATCAACAAATTGTTGGTATTAAAAATCTCCGCCAATCATCTCAGCAAGCTGAAGATGCTCTTTCACAGGGATTGGAAAAACTTCAGCAGAGTTTGGTCCTTGACATGGCAGTTGATCCATTGGGTGTAGGAAACTTCGGACTTCAGATGGCTCTTGCTATAGACAAATTTGAGGCACTAGAAGGTTTTGTAAGCCAGGCAGATCACCTTAGACAACAAACTCTGCTTCACATGTCACGCATACTCTCAACTCATCAAGCTGCTCGTGGCTTGCTGGCTCTTGGGGAATACTTTCACCGTGTTCGCACTCTTTGCTCTCTTTGGAATTCTCGTCCATGTGAACTTCCCTAG 1059 0.4381 MKMDIYEPFQQVGMWGDAFKVDGGLNSIASPILMVDTNVETQSEYIPQESREPSGADQETTDKDANKMRRRLAQNREAARKSRLRKKAYVKQLESSRMKLVQLELEIGKARKQGLYMGTALDASYIGSTSETINPVIVAFEIEYGQWVEEQHRRNEELRHAFQTQAPDVQLNAVVQSVLNHYSNLFRMKADAAKADVLYLLSGVWKASVERIFLWIGGSRPSQLLNIIVPQLEPLTDQQIVGIKNLRQSSQQAEDALSQGLEKLQQSLVLDMAVDPLGVGNFGLQMALAIDKFEALEGFVSQADHLRQQTLLHMSRILSTHQAARGLLALGEYFHRVRTLCSLWNSRPCELP 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7901g00020 352 MobiDBLite consensus disorder prediction 44 67 - -
Vium7901g00020 352 Pfam Seed dormancy control 156 229 IPR025422 GO:0006351|GO:0043565
Vium7901g00020 352 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 70 85 IPR004827 GO:0003700|GO:0006355
Vium7901g00020 352 PANTHER TRANSCRIPTION FACTOR TGA9 3 350 - -
Vium7901g00020 352 SUPERFAMILY Leucine zipper domain 67 100 IPR046347 GO:0003700|GO:0006355
Vium7901g00020 352 ProSiteProfiles DOG1 domain profile. 137 347 IPR025422 GO:0006351|GO:0043565
Vium7901g00020 352 Coils Coil 243 263 - -
Vium7901g00020 352 SMART brlzneu 62 123 IPR004827 GO:0003700|GO:0006355
Vium7901g00020 352 Pfam bZIP transcription factor 66 100 IPR004827 GO:0003700|GO:0006355
Vium7901g00020 352 Coils Coil 86 113 - -
Vium7901g00020 352 Gene3D - 65 115 - -
Vium7901g00020 352 FunFam BZIP family transcription factor 66 115 - -
Vium7901g00020 352 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 65 100 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7901g00020 Vium-Chr7901 135170 138081 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7901g00020 3 350 Calmodulin-binding Proteins AT1G77920 53.867 3.76e-131 377
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vium7901g00020 DOG1 3e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7901g00020 K14431 - gmx:100794268 607.831