Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7901g00008 ATGCCACGACAATCGCCACCGTCACAGCCGCAGCAGCCCAGCGAACTGGAGCCGGCCATATGGCAAGCCTGTGCTGGACCGTCTGTGGAAATCCCGAAGCCAAATTCTATGGTTTACTACTTTCCTCAGGGACACTTTGATCAAGCGTCTTCGGCACCCAAGAATCTCTCCAGTCACCTTCTTGCCAAACCCTTCATTATCTGCAGTGTTGTCTCGGTTAATTTTCTTGCCGATCCTCTTACCGACGAGGTTTTCACCAAGATGGTTCTCCAACCTGTTGGTAACAACCTTCCTGTGGAATCCTTCCATACTCCTGCCTTTGCTCCTCCTGCTGTTGTTCCTCCTGCTGTTGCTCCTCCTCCAAATGACGACAACGAGGTCGTTTCGTTCGCAAAGATTCTCACGCCGTCTGATGCCAATAACGGCGGCGGCTTCTCCGTGCCTAGGTTCTGCGCCGACTCTGTCTTTCCGAAGCTGAACTTTGGCGCCGACCCGCCCGTGCAGAACCTCTCTGTCACGGACGTGCACGGCTTCACCTGGGAGTTCCGCCACATTTATCGTGGGACTCCGCGCCGCCACTTGCTCACCACTGGCTGGAGCACATTCGTCAACAACAAGAAACTGGTAGCTGGAGACTCTGTCTTGTTTATGAAGCATGCCCAACGTTTGTTTGTCGGAATTCGTCGCGCCACACGTTTCTCTTCTGAAAGGGCCAACTGCCCGAAACTCATGTTAATTGAGGAGGAGGAAGACGAGGAAGAAGACGAAGAAGACGAAGAGAAGGTGAAGAGAGTTTTCAAGAGGGACGGGAAGGGGAAACTGACGGCTAAGGTTGTTGTGGAAGCTGCAGAATTGGCTGCGCGACAAATGCAGTTTGAGGTTGTGTATTATCCCAAGGCTGGTTGGTCTGAGTTCGTGGTGAAGATTGAGGTGGTGGATGCAGCTATGAGGATTGCATGGAGCGAAGGAATGAGAGTGAAGATGTCTGTGGAGACTGACGATTCATCCAGGATGACTTGGTTTCAGGGTACCGTCTCTGCTGTCTCATCTCACAATAATGGCCAATGGTGCAGTTCGCCTTGGCGCATGCTTCAGGTTACATGGGATGAACCTGAAGGGCCGCGGAATGGAAAATGGGTTAGCCCTTGGCAGGTGGAACTTGTTTCCCCCCCACCTGTCCTTCATCCAGCATTCCCCCCAGCAAAAAGGCTCAGAACTGCTAATGGTTATGGGGTGATGACTAATGGAGAGGGAGGAACCTTTTCTGTGGCCGGAGTCACTAATTCAGCAATGGTACAACTGAATCCGGCATATTTGGGTTATAGTACTTTTCCTGCTGGCATGCAGGGAGCCAGGCATGATGTATTTTCTGCATCAAGTTTTCCCAGTTATCCAAGGGACTTGTCTCATGTGTGTATCGATAATTCCTTTGGAAACAACACATTTTCAAGGCAGAAAAATTTGCCGACAGAACTACATGTTGGCGGCAACTCTCAATCTGATGAATTATCACCTGATAGTAGTTTCCATTCCTGTGTCACAGACACTCTTGGGAATACCAACAACTCAATAAAACCTGCGCCCGATTCATTTCAGCTATTTGGTGCAGTCATTAGGAAAGAACAACCTGTTCAAAATGATTTAACAGGAGATAAAGCCCCTGGCAGATGA 1671 0.5003 MPRQSPPSQPQQPSELEPAIWQACAGPSVEIPKPNSMVYYFPQGHFDQASSAPKNLSSHLLAKPFIICSVVSVNFLADPLTDEVFTKMVLQPVGNNLPVESFHTPAFAPPAVVPPAVAPPPNDDNEVVSFAKILTPSDANNGGGFSVPRFCADSVFPKLNFGADPPVQNLSVTDVHGFTWEFRHIYRGTPRRHLLTTGWSTFVNNKKLVAGDSVLFMKHAQRLFVGIRRATRFSSERANCPKLMLIEEEEDEEEDEEDEEKVKRVFKRDGKGKLTAKVVVEAAELAARQMQFEVVYYPKAGWSEFVVKIEVVDAAMRIAWSEGMRVKMSVETDDSSRMTWFQGTVSAVSSHNNGQWCSSPWRMLQVTWDEPEGPRNGKWVSPWQVELVSPPPVLHPAFPPAKRLRTANGYGVMTNGEGGTFSVAGVTNSAMVQLNPAYLGYSTFPAGMQGARHDVFSASSFPSYPRDLSHVCIDNSFGNNTFSRQKNLPTELHVGGNSQSDELSPDSSFHSCVTDTLGNTNNSIKPAPDSFQLFGAVIRKEQPVQNDLTGDKAPGR 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7901g00008 556 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 15 542 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vium7901g00008 556 SMART B3_2 130 231 IPR003340 GO:0003677
Vium7901g00008 556 SUPERFAMILY DNA-binding pseudobarrel domain 125 236 IPR015300 -
Vium7901g00008 556 Gene3D - 127 231 IPR015300 -
Vium7901g00008 556 FunFam Auxin response factor 128 231 - -
Vium7901g00008 556 CDD B3_DNA 129 229 IPR003340 GO:0003677
Vium7901g00008 556 Pfam Auxin response factor 282 365 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vium7901g00008 556 Gene3D - 320 390 - -
Vium7901g00008 556 Pfam B3 DNA binding domain 130 230 IPR003340 GO:0003677
Vium7901g00008 556 ProSiteProfiles B3 DNA-binding domain profile. 130 231 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7901g00008 Vium-Chr7901 65950 69862 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7901g00008 15 542 B3 DNA Binding Superfamily AT1G77850 46.939 2.60e-148 437
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vium7901g00008 B3 1.1e-20 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7901g00008 - - gmx:102662128 664.84