Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7901g00003 ATGCTCCGCTTCCTGTGTACCTTGTTGTTGCCGGCTATGACCGGGGGACGATGTCTCCCGTTGAAGGACATGACGGAGGAAGGGGATGCCGCTGCCGTGAGGAGACCCTATCGGTCTGATTTTGTGGCGGAAATTACTCGTGATTTTTCCGTAAGTGAAATTGATTACTTATCCCAGGCTAGGAAAGCGCTCTCAGAACGTTCTCCCTTTGATGTTGCTGAAGAAACTTCGACTTCTGCACTGACGCTTCCCAGTGGATTGGCTGGCCTGCTGAACAGACAGACTGATAACAGGAGACGTCCTAAGAAGTCCCATTCTGGTGGACAAAAGAGGAAATCTTCGACTAGGGCAAACCAGAAGAAACCTGAGGATTCTAACATTTGGATTGAGACTGAGGAGTACTTTAGAGACCTAACCTTGGCAGATATTGACTTATTGCTTGAGTTCTCTCGCACTTCTAGTTTAGCTTCTCAGGACTTCTCCATTCCATTATTGGGAAATGTTCCGACCTACAATGCAGTTCGAAGTTATAGCGAGAAGGAAATGGAGCCTGCTCCTAAAGTCAGCGTAGGAGTGGGTGGTGAGGATGAAAAGAAGGATGATTTAGTGGGTGGTGAGGATGAAAAGAAGGATGATTTAGTGGGTAGTGAGGATGCAAAGAAGGTTGGTGAAGCTGTGGAAAGTGAGGATGGATTGTTGGTAATTGAGGCAATTGATGATGCTGTTGTTGAACAACCATGTCCTCGGGATGACAGGAATCAAGACAGTTCTGATTCTGCTATCAGTTTAGAATGGTTTTTGGGACGTAGGAATAAACTTTCTTTAACTTCTCAGCGTCCCTCCAAGAAAAGGAGGCTTTTGAGCGTTGAGGCTGGTTTGGAGAAAGTTATAATGTCTTGTCCTTACGACGAGGGTCAACCGTTTTGCCACTACTGTGGCAGAGGAGACACTGGCAGTGACTCCAATAGGTTAATTGTATGCGCAGCTTGTAAAATGGCAGTTCACGGGAAGTGCTATGGGGTGCATGAGGGTGTGGATGAGGCTTGGCTGTGCTCCTGGTGCAAACAAATGGGTGATGTTGATGAATCAGTGAATCCTTGTGTTCTTTGTCCAAAGAAGGGTGGTGCATTAAAACCAGTTTATAGCAGTGTGAAAGGTGCTGGCTCAGCTTCATTTGTGCACTTATTCTGCTCTCTGTGGATGCCTGAGGTTTATATAGATGATCTGGAGAAGATGGAACCTGTTATGAATGTGGGGGAAGTCAAGGAAACCAGGAAGAAATTAGTGTGTAGTGTTTGCAAATCAAAGTGTGGTGCATGTGTTCGGTGCAGCCATGGAAGCTGCAGAACTTCTTTCCACCCTTCATGTGCAAGGGATGCGAGACATAGGATGGAGGTTTGGGCAAAGTATGGTAATGATAATGTTGAGTTGCGGGCTTTTTGTTTGAAACACTCGGATCTACCAGAGAGCAAAAGCATCTTGCCACAGGAAGCCTTTATAGAGGTTAGAAATGAATTATCAGAAGCCAGTGACCTTCCAGTGACATTGCCAGTGAGTGGTGAACACAACTTGAGAGATTGCAGGAATGGAGGATTAGTTTCTGACAGTAATCCAGACAAATTGAACCATAGTGACGAACCACCAGATGGAGGACTACCTGATTGCAGGTTAAGTGATCACATGTTGGGATGTGGTGCTGTGCCCCAACAAAATGTTGAAGTGGTAGAGAGAGGGAATGAGAATGCTGATGGATCTGATTCTAACAGTTTTGCTCTAGTTTTGAAGAAGTTGATTGATCGAGGAAAAGTTAATGTAAAAGATGTAGCATTGGAGATTGGCATTTCACCAGATACATTAACTGCAAATACAAATGAAGCTTATATGGCCCCTGATGTCCGACACAAAATAGTGAATTGGCTAAAAGGCCATGTATATTCCGGTGCATTTCAGAAGGGTTTAAAGGTCAAATTCAAACCAGCCAATGCATCCAAAATTGATAGTGGAGCCACGGATGGCTCTGATACTTTACCAATATCAGACTCAGGTTTGCTGGATCCTGTTGCTGTTAAGTCGGTTCCGCCAAGGAGGAGAACAACCAATAACATTAGGATTTTGAAGGATAATAAAGTGATATGTTCATCTGAGGGGGTTACAAGTGAGAATGGGATGCCGGTACACATGTGCAGAGTAGGTCAGTCCAACTGCGAGAATCCAACAAGTTCCAATGAAGCATCCATCCCCAATGCAACAGAAACGAACTTACCCAAGTATGAGGATGTTTTTCAAGAAGTTCAAGAGAATGCTGATAACCCTCACAAATCCTGCTTATCTGGAAAGGGTGCAATCTCTAGTTACATTCATCCATTCATCAACAAGAAATTGCTGCAGATTCAGGATGGGGTGCCCTTGGAGAATGTTATATGTTCAACTGACAAGGGAAATTCGGGTTTGGTTGAATCCTTTGGAGCTAGTGGCTGCTCAAATAGCCAAAATCAGAACTTAACTTCCAGTGAAATATCAAAGCCTGACGAAGTAAAGAGGGAGCAATTGGTTAGGACTAAAAAAGTGGAACTTTTGGAATTTTCTCCCCAAGATGAGTTGGAGGGGGAACTTGTTTATTTTCAATATAGGTTATTGCAGAATGTGGTTGCAAAAAGAAGGCATATTGATAATTTAATCTATAGTGTTGCAAAGAGTTTACCACATGAGATTGATAAGGCACATCAACAAAGATGGGATGATGTTATTGTTAATCAATATCTACGTGATCTTAGAGAGGCAAAAAAGCAGGGCAGAAAAGAAAGAAAGCACAAGGAAGCACAGGCAGTATTGGCTGCTGCAACTGCTGCTGCAGCAGCATCTTCTAGGTCATTCCGGAAAGACACATTAGATGAATCTATGCAACAGGAGAATTTTTTAAAATCAGACCATTTAAATGGAAGGGCGGGTGCTTGTTCTCAACCAATGCCTCGAGCTAAAGAGACACTTTCAAGAGTAGCTGTGACTAGAACTTCATCAGAGAAATATTCGGATTTTTGCATGCCAACCTCAGATTTTTCTAAGGAGCAATGTAAATCATGTGATATTTGTAGACGATCAGAGACTATTTTAAACCCTATCCTAGTCTGCTCTGGTTGTAAGGTTTCAGTCCACTTAGATTGCTATCGTAGTGTGAAAGAAACGACAGGTCCGTGGTACTGTGAGTTATGTGAAGATTTGTCATCTAGAAGCTCTGAGGCATCTGCCATCAACTTTTGGGAGAAACCTTATATTAGTGTGAAATGTGCTCTCTGTGGTGGTACTACTGGTGCTTTTAGGAAGTCTTCTGATGGTCAATGGATTCATGCTTTCTGTGCTGAGTGGGTTTTTGAGTCTACGTTCAGAAGAGGACAAATAGATGCTGTGGAAGGAATGCTCTCGGTGTTCATTGTTAAATGCCAGGAAAGTGTGCCAAAAGGCGTTGACACTTGTTGCATCTGCCATTGCAAGAATGGTGTATGCATGAAGTGCTGCTATGGGCATTGTCAGACCACATTCCACCCATCCTGTGCTAGAAGTGCTGGTTTGTACATGAATGCAAGGACTGCTGGTGGCAAGGTTCAACACAAGGCTTACTGTGAAAAACATAGTTTGGAGCAAAAAGCGAAGGCTGAAAATCAAAAACATGGAATTGAAGAGTTAAAAAGTATCAGGCAAATTAGGGTTGAACTAGAGAGATTACGTCTCCTTTGTGAAAGAATTGTCAAACGTGAAAAAATAAAGCGGGAATTAGTACTATGTTCACATGACATACTTGCCTTTAAGAGAGATAATGTTGCGAGGTCTGTGCTAGTTCACAGCCCTTTCATCCTTCCTGATGGTAGTTCAGAATCAGCTACAACGTCTCTAAAAGGGAACACAGAGGGATACAGATCATGCAGTGAACCTCCCCAAAGATCAGATGATGTTACTGTTGACAGTTCTATTTCTGCTAAGCGCCGTGTCAGAGTTGCCATATCTATGGATGCAGACCCAAAATTGGATGATGACTGTTCAACCTCCCAGAGCAAATATAACCACAAGATTCCAGAAAGAACACAATTTTCTGGCAAGAAGATTCCTCATAGAGCTGCTGCATCACGAAATATTTTGGATGAAGGTGGATGGAGATCCAAATCTAGAAAGCATGCCGAAACATTTGGAAAAGAGCTTGTTATGACGTCAGATGAAGCGTCTATGAAGAATTCAAGGCTGCCAAAAGGATATGCATATGTTCCTGCTGATTGTCTGTCAAATGACAAGCACTCTAACGAGGATATGTATGCTAGTGGGCCTGTGGAGCATGACAGATAG 4332 0.431 MLRFLCTLLLPAMTGGRCLPLKDMTEEGDAAAVRRPYRSDFVAEITRDFSVSEIDYLSQARKALSERSPFDVAEETSTSALTLPSGLAGLLNRQTDNRRRPKKSHSGGQKRKSSTRANQKKPEDSNIWIETEEYFRDLTLADIDLLLEFSRTSSLASQDFSIPLLGNVPTYNAVRSYSEKEMEPAPKVSVGVGGEDEKKDDLVGGEDEKKDDLVGSEDAKKVGEAVESEDGLLVIEAIDDAVVEQPCPRDDRNQDSSDSAISLEWFLGRRNKLSLTSQRPSKKRRLLSVEAGLEKVIMSCPYDEGQPFCHYCGRGDTGSDSNRLIVCAACKMAVHGKCYGVHEGVDEAWLCSWCKQMGDVDESVNPCVLCPKKGGALKPVYSSVKGAGSASFVHLFCSLWMPEVYIDDLEKMEPVMNVGEVKETRKKLVCSVCKSKCGACVRCSHGSCRTSFHPSCARDARHRMEVWAKYGNDNVELRAFCLKHSDLPESKSILPQEAFIEVRNELSEASDLPVTLPVSGEHNLRDCRNGGLVSDSNPDKLNHSDEPPDGGLPDCRLSDHMLGCGAVPQQNVEVVERGNENADGSDSNSFALVLKKLIDRGKVNVKDVALEIGISPDTLTANTNEAYMAPDVRHKIVNWLKGHVYSGAFQKGLKVKFKPANASKIDSGATDGSDTLPISDSGLLDPVAVKSVPPRRRTTNNIRILKDNKVICSSEGVTSENGMPVHMCRVGQSNCENPTSSNEASIPNATETNLPKYEDVFQEVQENADNPHKSCLSGKGAISSYIHPFINKKLLQIQDGVPLENVICSTDKGNSGLVESFGASGCSNSQNQNLTSSEISKPDEVKREQLVRTKKVELLEFSPQDELEGELVYFQYRLLQNVVAKRRHIDNLIYSVAKSLPHEIDKAHQQRWDDVIVNQYLRDLREAKKQGRKERKHKEAQAVLAAATAAAAASSRSFRKDTLDESMQQENFLKSDHLNGRAGACSQPMPRAKETLSRVAVTRTSSEKYSDFCMPTSDFSKEQCKSCDICRRSETILNPILVCSGCKVSVHLDCYRSVKETTGPWYCELCEDLSSRSSEASAINFWEKPYISVKCALCGGTTGAFRKSSDGQWIHAFCAEWVFESTFRRGQIDAVEGMLSVFIVKCQESVPKGVDTCCICHCKNGVCMKCCYGHCQTTFHPSCARSAGLYMNARTAGGKVQHKAYCEKHSLEQKAKAENQKHGIEELKSIRQIRVELERLRLLCERIVKREKIKRELVLCSHDILAFKRDNVARSVLVHSPFILPDGSSESATTSLKGNTEGYRSCSEPPQRSDDVTVDSSISAKRRVRVAISMDADPKLDDDCSTSQSKYNHKIPERTQFSGKKIPHRAAASRNILDEGGWRSKSRKHAETFGKELVMTSDEASMKNSRLPKGYAYVPADCLSNDKHSNEDMYASGPVEHDR 1443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7901g00003 1443 MobiDBLite consensus disorder prediction 90 124 - -
Vium7901g00003 1443 ProSitePatterns Zinc finger PHD-type signature. 309 354 IPR019786 -
Vium7901g00003 1443 ProSiteProfiles Extended PHD (ePHD) domain profile. 364 485 IPR034732 -
Vium7901g00003 1443 ProSiteProfiles Extended PHD (ePHD) domain profile. 1092 1210 IPR034732 -
Vium7901g00003 1443 MobiDBLite consensus disorder prediction 539 553 - -
Vium7901g00003 1443 MobiDBLite consensus disorder prediction 1425 1443 - -
Vium7901g00003 1443 CDD ePHD 1095 1209 - -
Vium7901g00003 1443 MobiDBLite consensus disorder prediction 1422 1443 - -
Vium7901g00003 1443 MobiDBLite consensus disorder prediction 192 215 - -
Vium7901g00003 1443 MobiDBLite consensus disorder prediction 527 553 - -
Vium7901g00003 1443 ProSiteProfiles Zinc finger PHD-type profile. 1024 1073 IPR019787 -
Vium7901g00003 1443 MobiDBLite consensus disorder prediction 1288 1318 - -
Vium7901g00003 1443 PANTHER PHD FINGER PROTEINS 104 957 - -
Vium7901g00003 1443 MobiDBLite consensus disorder prediction 1288 1320 - -
Vium7901g00003 1443 ProSiteProfiles Zinc finger PHD-type profile. 306 357 IPR019787 -
Vium7901g00003 1443 SUPERFAMILY FYVE/PHD zinc finger 1018 1071 IPR011011 -
Vium7901g00003 1443 SMART PHD_3 1026 1071 IPR001965 -
Vium7901g00003 1443 SMART PHD_3 308 355 IPR001965 -
Vium7901g00003 1443 SMART PHD_3 1156 1210 IPR001965 -
Vium7901g00003 1443 SMART PHD_3 429 485 IPR001965 -
Vium7901g00003 1443 MobiDBLite consensus disorder prediction 182 215 - -
Vium7901g00003 1443 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1015 1076 IPR013083 -
Vium7901g00003 1443 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 300 359 IPR013083 -
Vium7901g00003 1443 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1090 1211 IPR013083 -
Vium7901g00003 1443 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 360 487 IPR013083 -
Vium7901g00003 1443 SUPERFAMILY FYVE/PHD zinc finger 295 355 IPR011011 -
Vium7901g00003 1443 Pfam PHD-finger 322 355 - -
Vium7901g00003 1443 Pfam PHD-finger 1038 1071 - -
Vium7901g00003 1443 Coils Coil 921 941 - -
Vium7901g00003 1443 Pfam PHD-zinc-finger like domain 1093 1209 - -
Vium7901g00003 1443 Pfam PHD-zinc-finger like domain 366 484 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7901g00003 Vium-Chr7901 1285 15362 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7901g00003 303 491 C2H2 Transcription Factor Family AT3G14740 30.208 3.58e-17 83.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vium7901g00003 zf-HC5HC2H_2 3.8e-24 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7901g00003 - - vum:124846061 2883.59