Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7901g00001 ATGCTCCGCTTCCTGTGTACCTTGTTGTTGCCGGCTATGACCGGGGGACGATGTCTCCCGTTGAAGGACATGACGGAGGAAGGGGATGCCGCTGCCGTGAGGAGACCCTATCGGTCTGATTTTGTGGCGGAAATTACTCGTGATTTTTCCGTAAGTGAAATTGATTACTTATCCCAGGCTAGGAAAGCGCTCTCAGAACGTTCTCCCTTTGATGTTGCTGAAGAAACTTCGACTTCTGCACTGACGCTTCCCAGTGGATTGGCTGGCCTGCTGAACAGACAGACTGATAACAGGAGACGTCCTAAGAAGTCCCATTCTGGTGGACAAAAGAGGAAATCTTCGACTAGGGCAAACCAGAAGAAACCTGAGGATTCTAACATTTGGATTGAGACTGAGGAGTACTTTAGAGACCTAACCTTGGCAGATATTGACTTATTGCTTGAGTTCTCTCGCACTTCTAGTTTAGCTTCTCAGGACTTCTCCATTCCATTATTGGGAAATGTTCCGACCTACAATGCAGTTCGAAGTTATAGCGAGAAGGAAATGGAGCCTGCTCCTAAAGTCAGCGTAGGAGTGGGTGGTGAGGATGAAAAGAAGGATGATTTAGTGGGTGGTGAGGATGAAAAGAAGGATGATTTAGTGGGTAGTGAGGATGCAAAGAAGGTTGGTGAAGCTGTGGAAAGTGAGGATGGATTGTTGGTAATTGAGGCAATTGATGATGCTGTTGTTGAACAACCATGTCCTCGGGATGACAGGAATCAAGACAGTTCTGATTCTGCTATCAGTTTAGAATGGTTTTTGGGACGTAGGAATAAACTTTCTTTAACTTCTCAGCGTCCCTCCAAGAAAAGGAGGCTTTTGAGCGTTGAGGCTGGTTTGGAGAAAGTTATAATGTCTTGTCCTTACGACGAGGGTCAACCGTTTTGCCACTACTGTGGCAGAGGAGACACTGGCAGTGACTCCAATAGGTTAATTGTATGCGCAGCTTGTAAAATGGCAGTTCACGGGAAGTGCTATGGGGTGCATGAGGGTGTGGATGAGGCTTGGCTGTGCTCCTGGTGCAAACAAATGGGTGATGTTGATGAATCAGTGAATCCTTGTGTTCTTTGTCCAAAGAAGGGTGGTGCATTAAAACCAGTTTATAGCAGTGTGAAAGGTGCTGGCTCAGCTTCATTTGTGCACTTATTCTGCTCTCTGTGGATGCCTGAGGTTTATATAGATGATCTGGAGAAGATGGAACCTGTTATGAATGTGGGGGAAGTCAAGGAAACCAGGAAGAAATTAGTGTGTAGTGTTTGCAAATCAAAGTGTGGTGCATGTGTTCGGTGCAGCCATGGAAGCTGCAGAACTTCTTTCCACCCTTCATGTGCAAGGGATGCGAGACATAGGATGGAGGTTTGGGCAAAGTATGGTAATGATAATGTTGAGTTGCGGGCTTTTTGTTTGAAACACTCGGATCTACCAGAGAGCAAAAGCATCTTGCCACAGGAAGCCTTTATAGAGGTTAGAAATGAATTATCAGAAGCCAGTGACCTTCCAGTGACATTGCCAGTGAGTGGTGAACACAACTTGAGAGATTGCAGGAATGGAGGATTAGTTTCTGACAGTAATCCAGACAAATTGAACCATAGTGACGAACCACCAGATGGAGGACTACCTGATTGCAGGTTAAGTGATCACATGTTGGGATGTGGTGCTGTGCCCCAACAAAATGTTGAAGTGGTAGAGAGAGGGAATGAGAATGCTGATGGATCTGATTCTAACAGTTTTGCTCTAGTTTTGAAGAAGTTGATTGATCGAGGAAAAGTTAATGTAAAAGATGTAGCATTGGAGATTGGCATTTCACCAGATACATTAACTGCAAATACAAATGAAGCTTATATGGCCCCTGATGTCCGACACAAAATAGTGAATTGGCTAAAAGGCCATGTATATTCCGGTGCATTTCAGAAGGGTTTAAAGGTCAAATTCAAACCAGCCAATGCATCCAAAATTGATAGTGGAGCCACGGATGGCTCTGATACTTTACCAATATCAGACTCAGGTTTGCTGGATCCTGTTGCTGTTAAGTCGGTTCCGCCAAGGAGGAGAACAACCAATAACATTAGGATTTTGAAGGATAATAAAGTGATATGTTCATCTGAGGGGGTTACAAGTGAGAATGGGATGCCGGTACACATGTGCAGAGTAGGTCAGTCCAACTGCGAGAATCCAACAAGTTCCAATGAAGCATCCATCCCCAATGCAACAGAAACGAACTTACCCAAGTATGAGGATGTTTTTCAAGAAGTTCAAGAGAATGCTGATAACCCTCACAAATCCTGCTTATCTGGAAAGGGTGCAATCTCTAGTTACATTCATCCATTCATCAACAAGAAATTGCTGCAGATTCAGGATGGGGTGCCCTTGGAGAATGTTATATCAGGTTCAACTGACAAGGGAAATTCGGGTTTGGTTGAATCCTTTGGAGCTAGTGGCTGCTCAAATAGCCAAAATCAGAACTTAACTTCCAGTGAAATATCAAAGCCTGACGAAGTAAAGAGGGAGCAATTGGTTAGGACTAAAAAAGTGGAACTTTTGGAATTTTCTCCCCAAGATGAGTTGGAGGGGGAACTTGTTTATTTTCAATATAGGTTATTGCAGAATGTGGTTGCAAAAAGAAGGCATATTGATAATTTAATCTATAGTGTTGCAAAGAGTTTACCACATGAGATTGATAAGGCACATCAACAAAGATGGGATGATGTTATTGTTAATCAATATCTACGTGATCTTAGAGAGGCAAAAAAGCAGGGCAGAAAAGAAAGAAAGCACAAGGAAGCACAGGCAGTATTGGCTGCTGCAACTGCTGCTGCAGCAGCATCTTCTAGGTCATTCCGGAAAGACACATTAGATGAATCTATGCAACAGGAGAATTTTTTAAAATCAGACCATTTAAATGGAAGGGCGGGTGCTTGTTCTCAACCAATGCCTCGAGCTAAAGAGACACTTTCAAGAGTAGCTGTGACTAGAACTTCATCAGAGAAATATTCGGATTTTTGCATGCCAACCTCAGATTTTTCTAAGGAGCAATGTAAATCATGTGATATTTGTAGACGATCAGAGACTATTTTAAACCCTATCCTAGTCTGCTCTGGTTGTAAGGTTTCAGTCCACTTAGATTGCTATCGTAGTGTGAAAGAAACGACAGGTCCGTGGTACTGTGAGTTATGTGAAGATTTGTCATCTAGAAGCTCTGAGGCATCTGCCATCAACTTTTGGGAGAAACCTTATATTAGTGTGAAATGTGCTCTCTGTGGTGGTACTACTGGTGCTTTTAGGAAGTCTTCTGATGGTCAATGGATTCATGCTTTCTGTGCTGAGTGGGTTTTTGAGTCTACGTTCAGAAGAGGACAAATAGATGCTGTGGAAGGAATGCTCTCGGTGTTCATTGTTAAATGCCAGGAAAGTGTGCCAAAAGGCGTTGACACTTGTTGCATCTGCCATTGCAAGAATGGTGTATGCATGAAGTGCTGCTATGGGCATTGTCAGACCACATTCCACCCATCCTGTGCTAGAAGTGCTGGTTTGTACATGAATGCAAGGACTGCTGGTGGCAAGGTTCAACACAAGGCTTACTGTGAAAAACATAGTTTGGAGCAAAAAGCGAAGGCTGAAAATCAAAAACATGGAATTGAAGAGTTAAAAAGTATCAGGCAAATTAGGGTTGAACTAGAGAGATTACGTCTCCTTTGTGAAAGAATTGTCAAACGTGAAAAAATAAAGCGGGAATTAGTACTATGTTCACATGACATACTTGCCTTTAAGAGAGATAATGTTGCGAGGTCTGTGCTAGTTCACAGCCCTTTCATCCTTCCTGATGGTAGTTCAGAATCAGCTACAACGTCTCTAAAAGGGAACACAGAGGGATACAGATCATGCAGTGAACCTCCCCAAAGATCAGATGATGTTACTGTTGACAGTTCTATTTCTGCTAAGCGCCGTGTCAGAGTTGCCATATCTATGGATGCAGACCCAAAATTGGATGATGACTGTTCAACCTCCCAGAGCAAATATAACCACAAGATTCCAGAAAGAACACAATTTTCTGGCAAGAAGATTCCTCATAGAGCTGCTGCATCACGAAATATTTTGGATGAAGGTGGATGGAGATCCAAATCTAGAAAGCATGCCGAAACATTTGGAAAAGAGCTTGTTATGACGTCAGATGAAGCGTCTATGAAGAATTCAAGGCTGCCAAAAGGATATGCATATGTTCCTGCTGATTGTCTGTCAAATGACAAGCACTCTAACGAGGATATGTATGCTAGTGGGCCTGTGGAGCATGACAGATAG 4335 0.4311 MLRFLCTLLLPAMTGGRCLPLKDMTEEGDAAAVRRPYRSDFVAEITRDFSVSEIDYLSQARKALSERSPFDVAEETSTSALTLPSGLAGLLNRQTDNRRRPKKSHSGGQKRKSSTRANQKKPEDSNIWIETEEYFRDLTLADIDLLLEFSRTSSLASQDFSIPLLGNVPTYNAVRSYSEKEMEPAPKVSVGVGGEDEKKDDLVGGEDEKKDDLVGSEDAKKVGEAVESEDGLLVIEAIDDAVVEQPCPRDDRNQDSSDSAISLEWFLGRRNKLSLTSQRPSKKRRLLSVEAGLEKVIMSCPYDEGQPFCHYCGRGDTGSDSNRLIVCAACKMAVHGKCYGVHEGVDEAWLCSWCKQMGDVDESVNPCVLCPKKGGALKPVYSSVKGAGSASFVHLFCSLWMPEVYIDDLEKMEPVMNVGEVKETRKKLVCSVCKSKCGACVRCSHGSCRTSFHPSCARDARHRMEVWAKYGNDNVELRAFCLKHSDLPESKSILPQEAFIEVRNELSEASDLPVTLPVSGEHNLRDCRNGGLVSDSNPDKLNHSDEPPDGGLPDCRLSDHMLGCGAVPQQNVEVVERGNENADGSDSNSFALVLKKLIDRGKVNVKDVALEIGISPDTLTANTNEAYMAPDVRHKIVNWLKGHVYSGAFQKGLKVKFKPANASKIDSGATDGSDTLPISDSGLLDPVAVKSVPPRRRTTNNIRILKDNKVICSSEGVTSENGMPVHMCRVGQSNCENPTSSNEASIPNATETNLPKYEDVFQEVQENADNPHKSCLSGKGAISSYIHPFINKKLLQIQDGVPLENVISGSTDKGNSGLVESFGASGCSNSQNQNLTSSEISKPDEVKREQLVRTKKVELLEFSPQDELEGELVYFQYRLLQNVVAKRRHIDNLIYSVAKSLPHEIDKAHQQRWDDVIVNQYLRDLREAKKQGRKERKHKEAQAVLAAATAAAAASSRSFRKDTLDESMQQENFLKSDHLNGRAGACSQPMPRAKETLSRVAVTRTSSEKYSDFCMPTSDFSKEQCKSCDICRRSETILNPILVCSGCKVSVHLDCYRSVKETTGPWYCELCEDLSSRSSEASAINFWEKPYISVKCALCGGTTGAFRKSSDGQWIHAFCAEWVFESTFRRGQIDAVEGMLSVFIVKCQESVPKGVDTCCICHCKNGVCMKCCYGHCQTTFHPSCARSAGLYMNARTAGGKVQHKAYCEKHSLEQKAKAENQKHGIEELKSIRQIRVELERLRLLCERIVKREKIKRELVLCSHDILAFKRDNVARSVLVHSPFILPDGSSESATTSLKGNTEGYRSCSEPPQRSDDVTVDSSISAKRRVRVAISMDADPKLDDDCSTSQSKYNHKIPERTQFSGKKIPHRAAASRNILDEGGWRSKSRKHAETFGKELVMTSDEASMKNSRLPKGYAYVPADCLSNDKHSNEDMYASGPVEHDR 1444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7901g00001 1444 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1091 1212 IPR013083 -
Vium7901g00001 1444 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 360 487 IPR013083 -
Vium7901g00001 1444 MobiDBLite consensus disorder prediction 90 124 - -
Vium7901g00001 1444 ProSitePatterns Zinc finger PHD-type signature. 309 354 IPR019786 -
Vium7901g00001 1444 PANTHER PHD FINGER PROTEINS 103 958 - -
Vium7901g00001 1444 SUPERFAMILY FYVE/PHD zinc finger 1019 1072 IPR011011 -
Vium7901g00001 1444 Coils Coil 922 942 - -
Vium7901g00001 1444 ProSiteProfiles Extended PHD (ePHD) domain profile. 364 485 IPR034732 -
Vium7901g00001 1444 CDD ePHD 1096 1210 - -
Vium7901g00001 1444 MobiDBLite consensus disorder prediction 1289 1319 - -
Vium7901g00001 1444 MobiDBLite consensus disorder prediction 539 553 - -
Vium7901g00001 1444 MobiDBLite consensus disorder prediction 1289 1321 - -
Vium7901g00001 1444 ProSiteProfiles Extended PHD (ePHD) domain profile. 1093 1211 IPR034732 -
Vium7901g00001 1444 MobiDBLite consensus disorder prediction 527 553 - -
Vium7901g00001 1444 MobiDBLite consensus disorder prediction 192 215 - -
Vium7901g00001 1444 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1016 1077 IPR013083 -
Vium7901g00001 1444 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 300 359 IPR013083 -
Vium7901g00001 1444 MobiDBLite consensus disorder prediction 1426 1444 - -
Vium7901g00001 1444 ProSiteProfiles Zinc finger PHD-type profile. 306 357 IPR019787 -
Vium7901g00001 1444 MobiDBLite consensus disorder prediction 1423 1444 - -
Vium7901g00001 1444 MobiDBLite consensus disorder prediction 182 215 - -
Vium7901g00001 1444 SUPERFAMILY FYVE/PHD zinc finger 295 355 IPR011011 -
Vium7901g00001 1444 SMART PHD_3 1027 1072 IPR001965 -
Vium7901g00001 1444 SMART PHD_3 308 355 IPR001965 -
Vium7901g00001 1444 SMART PHD_3 1157 1211 IPR001965 -
Vium7901g00001 1444 SMART PHD_3 429 485 IPR001965 -
Vium7901g00001 1444 ProSiteProfiles Zinc finger PHD-type profile. 1025 1074 IPR019787 -
Vium7901g00001 1444 Pfam PHD-finger 322 355 - -
Vium7901g00001 1444 Pfam PHD-finger 1039 1072 - -
Vium7901g00001 1444 Pfam PHD-zinc-finger like domain 1094 1210 - -
Vium7901g00001 1444 Pfam PHD-zinc-finger like domain 366 484 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7901g00001 Vium-Chr7901 1284 15362 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7901g00001 303 491 C2H2 Transcription Factor Family AT3G14740 30.208 3.27e-17 83.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vium7901g00001 zf-HC5HC2H_2 3.8e-24 CL0390