Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium78g00001 ATGGAATTGTCACCGTCGTCTTCGTCTTCCTCCTCGTTGTCGTCGTCTTCTGGAAGCGATGCCGGCGGTGGTGGCGCTCTCACGTGGTTCGGGATGAGTTTTCCGTTCCGTTCTCCGCTTTCTCTCGTGATGGATTACTGCACGCGCGAGGATTCCGCGGAGCCCGTGATTATCATTCCCCGGACGCGCCCGCGGTTTCAGGCGCCGGCTGAATCTGCTGCTTCTGTTTCGGCCTCTGACTCTGGCGATAATGTGTGCGGCGGCGCTGAGGAGGTGGCGATACGCATCATTGGGGCCGGCGAGCAAGAGAGCGGTTCGTCGCCGTCGTCATCGAGGAGCCGCGCTGGGGAACCGGGATGTGAGGAGGCGGCGGTGGTTGGGAGGAGCGGGATGCTGTCGTCGGAGGCTCGCCGGCGAATGGCTGAGGAGAGGGTGCCGTTGGTGTCTTTGGATGATGGGATTGGTGGCGGTAGGGATTCTTCTTCGTCTTCCTCTACCTACCAGAGGTATGATATTCAGCAGGTTGCGAAGTGGATTGAACAGATTCTTCCGTTCTCCCTCTTGCTGTTGATTGTTTTCATCCGCCAGCATTTGCAAGGTTTCTTTGTCACAATTTGTATATCTGCTGTGATGTTCAAGTCAAATGAAATTGTTAAAAAGCAGACTGCCTTGAAGGGAGATCGGAAAGTCTCTGTTCTTCTTGGTATCTCTTTTGCCTTTATGCTGCATGTTATATGCATTTACTGGTGGTATCGAAATGATGATCTTTTATACCCACTGGCCATGCTTCCCCCAAAGACAAGTCCACCTTTCTGGCATACAATATTCATCATTTTGGTTAACGATACATTGGTGAGGCAAGCAGCAATGGCTTTGAAGTGTTTATTGCTTATTTACTACAAAAATGGAAGAGGCCATAACTTTCGTCGGCAGGGTCAAATGTTAACTCTGATTGAGTACACTCTTCTGCTGTATCGTGCCTTGTTGCCAACACCAGTTTGGTACCGATTTTTCTTGAACAAGGATTATGGAAGCCTGTTTTCCTCACTGACCACAGGATTGTATTTAACTTTCAAGCTAACATCAGTTGTTGAGAAGGTCCAATGCTTTGTTTCTGCCTTAAAAGCATTATCAAAAAAGGAAGTTCATTATGGGGTATATGCTACAACAGAACAGGTGAGTGCCGCTGGTGACATGTGTGCTATATGCCAGGAGAAGATGCAGGCTCCCATATTGTTGAGCTGTAAACACATGTTCTGCGAAGAGTGTGTATCTGAATGGTTTGAGAGAGAACGGACTTGCCCATTATGCAGGGCATTGGTAAAACCAGCTGATCTTCGGACCTTTGGAGATGGATCAACAAGCCTTTTTTTTCAGCTGTTTTAA 1386 0.487 MELSPSSSSSSSLSSSSGSDAGGGGALTWFGMSFPFRSPLSLVMDYCTREDSAEPVIIIPRTRPRFQAPAESAASVSASDSGDNVCGGAEEVAIRIIGAGEQESGSSPSSSRSRAGEPGCEEAAVVGRSGMLSSEARRRMAEERVPLVSLDDGIGGGRDSSSSSSTYQRYDIQQVAKWIEQILPFSLLLLIVFIRQHLQGFFVTICISAVMFKSNEIVKKQTALKGDRKVSVLLGISFAFMLHVICIYWWYRNDDLLYPLAMLPPKTSPPFWHTIFIILVNDTLVRQAAMALKCLLLIYYKNGRGHNFRRQGQMLTLIEYTLLLYRALLPTPVWYRFFLNKDYGSLFSSLTTGLYLTFKLTSVVEKVQCFVSALKALSKKEVHYGVYATTEQVSAAGDMCAICQEKMQAPILLSCKHMFCEECVSEWFERERTCPLCRALVKPADLRTFGDGSTSLFFQLF 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium78g00001 461 MobiDBLite consensus disorder prediction 1 21 - -
Vium78g00001 461 MobiDBLite consensus disorder prediction 98 122 - -
Vium78g00001 461 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 375 448 IPR013083 -
Vium78g00001 461 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 74 461 IPR044235 GO:0061630|GO:1904294
Vium78g00001 461 Pfam Zinc finger, C3HC4 type (RING finger) 398 441 - -
Vium78g00001 461 ProSiteProfiles Zinc finger RING-type profile. 400 438 IPR001841 -
Vium78g00001 461 ProSitePatterns Zinc finger RING-type signature. 415 424 IPR017907 -
Vium78g00001 461 SMART ring_2 400 437 IPR001841 -
Vium78g00001 461 CDD RING-HC_RNFT1-like 398 438 - -
Vium78g00001 461 SUPERFAMILY RING/U-box 390 443 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium78g00001 Vium-Chr78 10712 18896 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium78g00001 61 461 C3H Transcription Factor Family AT5G01960 67.082 0.0 553
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium78g00001 - K22379 gmx:100784614 765.763