Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7891g00001 ATGCAGCTACACCGTGCCTCCACCGCGGCAAAAGGCCTTGCCTGCTTCATTTTTGCCTTGAAACTCGTGCTGTTGTACGCCGCCGAGGGACAGCCTCAGCACCGCGGTCCCGACCTACATTGGTACCCCGGAACCGCCACCTGGTACGGCGACCCCGAAGGAGACGGAAGCACCGGTGGGGCATGTGGGTATGGTTCGATGGTGGATGTGAAGCCGTTCAGGGCGCGAGTGGGAGCAGTGGGGCCCTTGCTGTTCATGAACGGCGAAGGGTGCGGTGCCTGTTACAAGGTGAGGTGTTTGGACAAGAGCATATGTTCGAGACGAGCTGTGACAGTAATAATTACCGACGAGTGCCCAGGTTGCCCCTCTGACCAAACACACTTCGATCTCAGTGGTGCCGCCTTTGGTCGCATGGCCATTGCTGGCGAGAACGGTCCTCTCAGAGACCGTGGTCAAATCCCTGTCATTTATCGAAGAACACCGTGTAAATATCCCGGTAGAAAAATTGCTTTTCATGTCAACGAAGGCTCCACACCATTTTGGCTATCACTTCTGGTTGAGTTTGAGGACGCAGAAGGAGATATTGGCTCCATGCATATACGAGAATCGGGATCTACAGAATGGCTGCAGATGAATCACCTCTGGGGTGCAAATTGGTGCATTATTGGGGGACCTTTAAGAGGACCATTCTCAGTGAAATTGAGCTCTTCCACTGGTAGAAGCCTCTCTGCAAGAGATGTTATTCCGGGAAGTTGGGTTCCAAAGGCGACTTACACTTCTCGGCTAAATTTCTACCCTTAG 801 0.5318 MQLHRASTAAKGLACFIFALKLVLLYAAEGQPQHRGPDLHWYPGTATWYGDPEGDGSTGGACGYGSMVDVKPFRARVGAVGPLLFMNGEGCGACYKVRCLDKSICSRRAVTVIITDECPGCPSDQTHFDLSGAAFGRMAIAGENGPLRDRGQIPVIYRRTPCKYPGRKIAFHVNEGSTPFWLSLLVEFEDAEGDIGSMHIRESGSTEWLQMNHLWGANWCIIGGPLRGPFSVKLSSSTGRSLSARDVIPGSWVPKATYTSRLNFYP 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7891g00001 266 FunFam Expansin B3 27 163 - -
Vium7891g00001 266 PRINTS Major pollen allergen Lol pI signature 171 186 IPR005795 GO:0005576|GO:0019953
Vium7891g00001 266 PRINTS Major pollen allergen Lol pI signature 117 132 IPR005795 GO:0005576|GO:0019953
Vium7891g00001 266 PRINTS Major pollen allergen Lol pI signature 236 253 IPR005795 GO:0005576|GO:0019953
Vium7891g00001 266 PRINTS Major pollen allergen Lol pI signature 139 154 IPR005795 GO:0005576|GO:0019953
Vium7891g00001 266 PRINTS Major pollen allergen Lol pI signature 187 202 IPR005795 GO:0005576|GO:0019953
Vium7891g00001 266 CDD DPBB_EXPB_N 41 162 - -
Vium7891g00001 266 SUPERFAMILY PHL pollen allergen 167 260 IPR036749 -
Vium7891g00001 266 PANTHER EXPANSIN-B3 23 264 - -
Vium7891g00001 266 SMART dpbb_1 77 157 IPR007112 -
Vium7891g00001 266 SUPERFAMILY Barwin-like endoglucanases 40 166 IPR036908 -
Vium7891g00001 266 Gene3D - 163 261 IPR036749 -
Vium7891g00001 266 Gene3D - 28 162 IPR036908 -
Vium7891g00001 266 FunFam Beta-expansin 3 164 265 - -
Vium7891g00001 266 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 59 167 IPR007112 -
Vium7891g00001 266 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 180 260 IPR007117 -
Vium7891g00001 266 Pfam Lytic transglycolase 82 156 IPR009009 -
Vium7891g00001 266 Pfam Expansin C-terminal domain 169 249 IPR007117 -
Vium7891g00001 266 PRINTS Expansin/Lol pI family signature 208 222 IPR007118 GO:0005576
Vium7891g00001 266 PRINTS Expansin/Lol pI family signature 81 99 IPR007118 GO:0005576
Vium7891g00001 266 PRINTS Expansin/Lol pI family signature 40 55 IPR007118 GO:0005576
Vium7891g00001 266 PRINTS Expansin/Lol pI family signature 150 166 IPR007118 GO:0005576
Vium7891g00001 266 PRINTS Expansin/Lol pI family signature 246 260 IPR007118 GO:0005576
Vium7891g00001 266 PRINTS Expansin/Lol pI family signature 58 76 IPR007118 GO:0005576
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7891g00001 Vium-Chr7891 5080 8398 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7891g00001 13 202 Expansin Gene Family AT4G28250 71.053 4.60e-97 281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7891g00001 K20628 - gmx:100810778 529.635