Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7878g00001 ATGACGGGTTATTCTTCAAGATTCTATCTTGTTTTGCTTTTGTCCATTTGTGGAGTGGTTTCTTTGGCTTCCCCCATTGAAGATCAGAAGAGAGATAGAATTACCCAACTGCCAGGACAGCCAAAGAATGTGGGGTTTGCTCAGTATTCTGGCTACGTGACTGTGAATGAGCAAAGTGGGAGAGCACTGTTTTACTGGTTGGTGGAGGCACCAGTGAGTCGTCGACCAAAGTCAAGGCCACTAGTTTTGTGGCTCAATGGTGGCCCCGGTTGTTCCTCTATTGCTTATGGGGCATCTGAAGAAATTGGTCCTTTTCACATTAGGCCTGATGGAAGGTCGCTTTACTCGAACCCTTATGCTTGGAACAAGTTGGCAAATATACTGTTCCTCGATTCCCCTGCTGGTGTTGGTTTTTCATATTCGAATAAAACAACAGATCTGTATACATTTGGTGACCAGAAAACAGCTGAAGATGCATATGCTTTTCTTGTTAATTGGTTTGAAAGATTTCCTCAGTATAAGCATAGAGAATTCTACATTGCTGGAGAGAGTTATGCAGGTCACTACGTTCCCCAGTTGGGTCAAATTGTTTACCAGAAAAATAAGGGAATCCAGAATCCAGTCATAAATTTTAAGGGATTTATGGTTGGTAATGCTGTTACTGATGACTATCATGATTATGTTGGCACATTTGAATATTGGTGGACCCATGGTTTGGTTTCAGATTCCACGTATAGGATGCTAAAAATTGCGTGCAATTTTGGGTCCTCTCAGCATCCATCAGTGCAATGCATGCAGGCTCTGAGACTTGCATCTTTGGAGCAGGGAAACATTGATCCATACAGCGTTTACACTCAGCCTTGTAACAACACAGCATCACTCAGACGCGGCTTGAAGGGTCGCTATCCATGGATGTCTCGAGCATATGATCCCTGTACTGAAAGGTATTCTGATTTGTATTTCAACCGTCCAGAAGTTCAGAAGGCATTTCATGCCAATGTAACTGGGATTCCTTATGCATGGAAAGCATGCGGTGATATTGTTGGGAACTATTGGACTGATTCTCCATTATCTATGCTTCCTATATATCAAGAACTTATTAGTGCTGGTGTCCGAATATGGGTTTACAGTGGAGACACTGATGCGGTGGTTCCAGTGACTGCTACTCGATATTCAATTGATGCCTTGAAGCTACCTACCATCATCAATTGGTACCCTTGGTATGACAGTGGCAAGGTTGGTGGTTGGAGTCAAGTTTATAAAGGGTTGACAATGGTTACAGTAAGAGGTGCTGGACACGAGGTTCCTCTTCATAGGCCCCGACAAGCATTCATTCTTTTTAGTTCATTCTTGCAGAACAAGTCGATGCCAATAACAAGTTAG 1383 0.4302 MTGYSSRFYLVLLLSICGVVSLASPIEDQKRDRITQLPGQPKNVGFAQYSGYVTVNEQSGRALFYWLVEAPVSRRPKSRPLVLWLNGGPGCSSIAYGASEEIGPFHIRPDGRSLYSNPYAWNKLANILFLDSPAGVGFSYSNKTTDLYTFGDQKTAEDAYAFLVNWFERFPQYKHREFYIAGESYAGHYVPQLGQIVYQKNKGIQNPVINFKGFMVGNAVTDDYHDYVGTFEYWWTHGLVSDSTYRMLKIACNFGSSQHPSVQCMQALRLASLEQGNIDPYSVYTQPCNNTASLRRGLKGRYPWMSRAYDPCTERYSDLYFNRPEVQKAFHANVTGIPYAWKACGDIVGNYWTDSPLSMLPIYQELISAGVRIWVYSGDTDAVVPVTATRYSIDALKLPTIINWYPWYDSGKVGGWSQVYKGLTMVTVRGAGHEVPLHRPRQAFILFSSFLQNKSMPITS 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7878g00001 460 ProSitePatterns Serine carboxypeptidases, serine active site. 180 187 IPR018202 GO:0004185
Vium7878g00001 460 ProSitePatterns Serine carboxypeptidases, histidine active site. 423 440 IPR033124 GO:0004185
Vium7878g00001 460 FunFam Carboxypeptidase 28 290 - -
Vium7878g00001 460 Gene3D - 359 453 - -
Vium7878g00001 460 FunFam Carboxypeptidase 359 453 - -
Vium7878g00001 460 Gene3D alpha/beta hydrolase 28 290 IPR029058 -
Vium7878g00001 460 PRINTS Carboxypeptidase C serine protease (S10) family signature 130 140 IPR001563 GO:0004185|GO:0006508
Vium7878g00001 460 PRINTS Carboxypeptidase C serine protease (S10) family signature 166 191 IPR001563 GO:0004185|GO:0006508
Vium7878g00001 460 PRINTS Carboxypeptidase C serine protease (S10) family signature 117 129 IPR001563 GO:0004185|GO:0006508
Vium7878g00001 460 PRINTS Carboxypeptidase C serine protease (S10) family signature 423 436 IPR001563 GO:0004185|GO:0006508
Vium7878g00001 460 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 34 440 IPR001563 GO:0004185|GO:0006508
Vium7878g00001 460 Pfam Serine carboxypeptidase 38 453 IPR001563 GO:0004185|GO:0006508
Vium7878g00001 460 SUPERFAMILY alpha/beta-Hydrolases 29 456 IPR029058 -
Vium7878g00001 460 Gene3D - 312 348 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7878g00001 Vium-Chr7878 691 4682 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7878g00001 341 456 Calmodulin-binding Proteins AT2G22960 29.060 1.98e-12 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7878g00001 K16297 - gmx:100805722 922.924