Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7877g00003 ATGGAAACTACAAGGCGGTGGTTTAGTAAGTTCAAGGGAAATGATAAAATGAAGTCTGCAAAAGAAACTACAGGCGTGACCAAAGAAGGGCCAAAGCCCCCAACAAATGAAGAACCGCCTTCAAATGTAACCAAACAGAAGGTTGAAGCTGCAAAGCAGTACATAGAAAATCATTACAAGAAGCAGATGCAAAGCCTGCAGGAGAGGAAGGAAAGACGTAATATGCTAGAAAAGAAGTTGGCAGATGCCGAAGTGTCTGAGGAAGAGCAGCACAACTTGCTTCAGTATTTAGAGAAAAAGGAGAGGGAGTACATGCGGCTTCAGAGACATAAGATGGGGGCTGATGATTTTGAGCCGCTGACTATGATTGGAAAGGGTGCATTTGGAGAGGTTAGAGTCTGCCGGGAGAAGGCTACTGGTCATGTATATGCTATGAAGAAGCTTAAGAAATCTGAGATGCTTCGTCGTGGCCAGGTTGAACATGTCAAAGCTGAGAGAAACCTGCTTGCTGAAGTTGACAGCAATTGCATTGTTAAACTTTATTGTTCCTTTCAAGATGAGGAATATTTATATCTCATAATGGAGTATCTACCTGGTGGAGATATGATGACATTGCTGATGCGGAAGGATATACTGACAGAAGATGAAGCCAGATTCTATGTTGGGGAGACTGTCCTAGCCATAGAGTCCATTCATAAACATAATTATATTCATAGAGATATCAAGCCTGACAACTTGCTGCTAGATAGAAATGGTCACATGAAGTTATCAGATTTTGGATTATGTAAACCACTAGACTGCAGTAATCTTCAAGAAAAGGACTTTTCTGTTGGAAATAACCGAAGTGGAGCCCTCCAAAGTGATGGACGTCCAGTGGCTCCTAAACGAACTCAACAGGAACAACTGCAGCATTGGCAGAAAAATCGACGAATGCTTGCCTATTCTACAGTTGGAACACCTGATTATATTGCTCCAGAAGTTCTGCTGAAGAAAGGATATGGCGTGGAATGTGATTGGTGGTCTCTAGGAGCTATAATGTATGAAATGCTTGTGGGGTATCCACCCTTTTACTCAGATGAACCAATGTTGACTTGTAGAAAGATAGTAAATTGGAGAACTAATTTGAAATTTCCAGAAGAAGCTAAACTTTCAGTAGAGGCAAAAGATCTTATTTGTAGACTCCTGTGTAATGTAGAGCAGAGGCTTGGAACCAAAGGAGCCTATGAAATAAAGGCCCATCCATGGTTCAAAGGCATCGAATGGGACAAACTGTACAAAATGAAAGCTGCTTTCATACCTGAGGTCAATGATGAATTAGATACTCAAAACTTTGAGAAGTTTGAAGAGGTAGACAAGCAAACTGTAGCTTGCTCAAAAGCAGGGCCCTGGAGAAAGATGCTGCCATCTAAAGATGTTAACTTCGTTGGGTACACATACAAGAATTTGGAAATCGTAAATGATCATGAAATACCAGGAATTGCTGAATTGAAGAAGAAGAGCACAAAACCTAAAAGACCATCTATTAAGGCCCTATTTGAGGATGAATCAGCTGTGGCTGCGAATCAACCTGTCAGAGGGAGCTTCTTAAACCTCTTACCTCCTCAAATGGAAGTTCCTGAAAAAAGTGAATCACAGTGA 1638 0.4127 METTRRWFSKFKGNDKMKSAKETTGVTKEGPKPPTNEEPPSNVTKQKVEAAKQYIENHYKKQMQSLQERKERRNMLEKKLADAEVSEEEQHNLLQYLEKKEREYMRLQRHKMGADDFEPLTMIGKGAFGEVRVCREKATGHVYAMKKLKKSEMLRRGQVEHVKAERNLLAEVDSNCIVKLYCSFQDEEYLYLIMEYLPGGDMMTLLMRKDILTEDEARFYVGETVLAIESIHKHNYIHRDIKPDNLLLDRNGHMKLSDFGLCKPLDCSNLQEKDFSVGNNRSGALQSDGRPVAPKRTQQEQLQHWQKNRRMLAYSTVGTPDYIAPEVLLKKGYGVECDWWSLGAIMYEMLVGYPPFYSDEPMLTCRKIVNWRTNLKFPEEAKLSVEAKDLICRLLCNVEQRLGTKGAYEIKAHPWFKGIEWDKLYKMKAAFIPEVNDELDTQNFEKFEEVDKQTVACSKAGPWRKMLPSKDVNFVGYTYKNLEIVNDHEIPGIAELKKKSTKPKRPSIKALFEDESAVAANQPVRGSFLNLLPPQMEVPEKSESQ 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7877g00003 545 Pfam Protein kinase domain 119 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium7877g00003 545 CDD MobB_NDR_LATS-like 51 112 - -
Vium7877g00003 545 FunFam Non-specific serine/threonine protein kinase 201 268 - -
Vium7877g00003 545 ProSitePatterns Serine/Threonine protein kinases active-site signature. 236 248 IPR008271 GO:0004672|GO:0006468
Vium7877g00003 545 FunFam Non-specific serine/threonine protein kinase 88 200 - -
Vium7877g00003 545 Pfam Protein kinase C terminal domain 435 479 IPR017892 GO:0004674|GO:0005524|GO:0006468
Vium7877g00003 545 PANTHER SERINE/THREONINE-PROTEIN KINASE 35 464 - -
Vium7877g00003 545 SMART serkin_6 117 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium7877g00003 545 SUPERFAMILY Protein kinase-like (PK-like) 96 458 IPR011009 -
Vium7877g00003 545 ProSiteProfiles Protein kinase domain profile. 117 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium7877g00003 545 ProSiteProfiles AGC-kinase C-terminal domain profile. 417 489 IPR000961 GO:0004674|GO:0005524|GO:0006468
Vium7877g00003 545 ProSitePatterns Protein kinases ATP-binding region signature. 123 146 IPR017441 GO:0005524
Vium7877g00003 545 SMART pkinase_C_6 417 481 IPR000961 GO:0004674|GO:0005524|GO:0006468
Vium7877g00003 545 CDD STKc_NDR_like 115 480 - -
Vium7877g00003 545 FunFam Non-specific serine/threonine protein kinase 315 434 - -
Vium7877g00003 545 Coils Coil 59 86 - -
Vium7877g00003 545 Gene3D Phosphorylase Kinase; domain 1 115 200 - -
Vium7877g00003 545 Gene3D Phosphorylase Kinase; domain 1 435 445 - -
Vium7877g00003 545 MobiDBLite consensus disorder prediction 1 45 - -
Vium7877g00003 545 MobiDBLite consensus disorder prediction 1 25 - -
Vium7877g00003 545 Gene3D Transferase(Phosphotransferase) domain 1 312 434 - -
Vium7877g00003 545 Gene3D Transferase(Phosphotransferase) domain 1 201 267 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7877g00003 Vium-Chr7877 26818 39396 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7877g00003 1 539 AGC Kinase Gene Family AT4G14350 82.440 0.0 908
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_NDR Vium7877g00003 Pkinase 4.7e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7877g00003 K08790 - gmx:100795087 1063.91