Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium786g00002 ATGGAAGGTCGCCGGAGGATAACGCTTTACGACCAAATGACAGCTAGCAACGACAATACCAACAGCGGCAGCAGCAGCCGAGACTCACTAGCGAGCCTCATGCTCGAAGACGTCGTATTTAAGAAGGCCGAAGCCGAAGCCGACGCCGAAGCGAGCCGTGACCTGAGCCGAAGCCGGACTCTCCAAGACATCATTCGCGAAGAGAAGCCTAACGAAGACGCGAAGGATCGCAACTCCTGGAAAGCCTTCAAGGAGAAGCTTCGGCTCAAGCGCGCTATCGGTTTGGCTTGGTCCTCCGCCCCTACTCACAGTAATAACAGCAATAATAACGACAATGAAGACGGAAGTTTACCTCAAACTCGCCTCCTCTCCGACGACGCGGCGACTCAGCAGAACGACGTCGTTGTGGAGGACGCAAACGATTCAGATCCGATCGCGCGGTTCGGATCTCCGACGGACAACACGGCAGCCGGCGGCGATTCCTCCGACGGGGAGAACAACCAGGAGGTGGCGGTTGGCGTGTCGCTGATGGATTTGTTGGAGGAAGCTGAGCAGGAAATGGATTTGTACAGAGTGAGCGATGATGATGTGGTGGCAGATTTTGAGAAGAGGGACGAAGATGAAGCGGAAGATGAAGAAAAAGAGGGTTTGGTGGAGTATAACTGCTGCGTCTGCATGGTGCGCCATAAAGGCGCGGCGTTTATCCCGTGCGGACACACCTTCTGCAGAATGTGTTGCAGAGAGATTTGGGCCAGCAGAGGGAATTGCCCTCTCTGCAATAATTTAATTTTGGAAATTCTTGATATTTTCTGA 813 0.5351 MEGRRRITLYDQMTASNDNTNSGSSSRDSLASLMLEDVVFKKAEAEADAEASRDLSRSRTLQDIIREEKPNEDAKDRNSWKAFKEKLRLKRAIGLAWSSAPTHSNNSNNNDNEDGSLPQTRLLSDDAATQQNDVVVEDANDSDPIARFGSPTDNTAAGGDSSDGENNQEVAVGVSLMDLLEEAEQEMDLYRVSDDDVVADFEKRDEDEAEDEEKEGLVEYNCCVCMVRHKGAAFIPCGHTFCRMCCREIWASRGNCPLCNNLILEILDIF 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium786g00002 270 PANTHER OS01G0917900 PROTEIN 4 270 - -
Vium786g00002 270 SMART ring_2 222 259 IPR001841 -
Vium786g00002 270 MobiDBLite consensus disorder prediction 99 119 - -
Vium786g00002 270 MobiDBLite consensus disorder prediction 45 80 - -
Vium786g00002 270 CDD RING-HC 222 259 - -
Vium786g00002 270 MobiDBLite consensus disorder prediction 10 28 - -
Vium786g00002 270 SUPERFAMILY RING/U-box 221 266 - -
Vium786g00002 270 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 176 267 IPR013083 -
Vium786g00002 270 Pfam Zinc finger, C3HC4 type (RING finger) 220 263 - -
Vium786g00002 270 ProSiteProfiles Zinc finger RING-type profile. 222 260 IPR001841 -
Vium786g00002 270 MobiDBLite consensus disorder prediction 1 28 - -
Vium786g00002 270 MobiDBLite consensus disorder prediction 138 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium786g00002 Vium-Chr786 15895 17557 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium786g00002 4 270 C3H Transcription Factor Family AT3G25030 35.401 1.68e-41 141
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium786g00002 - - gmx:100819018 350.903