Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7868g00001 ATGAAATATCAGAAAGACTATAATAAGGAATCAATTAAGAAGCTAGAAGAGAAGGTGATGGAGAATAAGAAAAAGTATGAGGAATTTTGTATGACATCTACTGCAGAGATGGCCATTGTGCCTGTTGAGGAAGTAATCATTTTGAAAAATTTACTTCAGAAAGAGACTCTTATCAGAAATGCTACCGAAGGGGAGCTAAATCGTCTGAAAACTCAAATGAAAGAACTGAAAGATCGGGAGGTATGTTTTTTTGCCCTTTGTACTTTTCACTTTGCATATGTGCCTTTTTATGCATCAAGAGAATCACATATCTTAAAACTTCGTAAGATGTTGGAAGATGAGGCACAGCAGAAGGAGAATCTCAAAAGAGAAATAACCAGATTGCAAAGTCAACTGCTGCAATTAGGTTTTAATGTTGGAAAAAAAACACAAAAAATTCGTCGAGTTCGATCTGAGAAAGTTGCTGGTGGTTTAGATTATTCTCCCTCTTTCCTGGTTAAACATCAACAGCAAGCTTCAGGAAATGGAGAGGAGGCCTCAGCTGCCAAGCTCTTTGAACAAGGTGGATTGCTGAAGATTCTGTCGTTTCTTGAACCAGAAGATGCTGATGCACAAATCCATGCCGTGAAAATAATAGCTAATTTAGCTTGTGAAGAAAGAAACCAGAAGAAGATTGTAGAAGTAGGTGGACTTACGCCCTTGCTTTCACTCCTTAAGAACTCAAAAGATGAAGCCACACATAGAGTTGCAGCAAGCGCCATTGCCAATTTGGCAATGAATGAAACCAACCAAGATCTCATTGCCGCTCAAGGAGGCATTAATTTACTGTCAATGGTAGCAGCCAATGCTGAAGATCCTCAGACCCTTCGAATGGTTGCTGGAGCATTTGCTAATCTTTTTGGAAATGGTAAACTTTTGATATTATCTCATTTTTAA 936 0.3846 MKYQKDYNKESIKKLEEKVMENKKKYEEFCMTSTAEMAIVPVEEVIILKNLLQKETLIRNATEGELNRLKTQMKELKDREVCFFALCTFHFAYVPFYASRESHILKLRKMLEDEAQQKENLKREITRLQSQLLQLGFNVGKKTQKIRRVRSEKVAGGLDYSPSFLVKHQQQASGNGEEASAAKLFEQGGLLKILSFLEPEDADAQIHAVKIIANLACEERNQKKIVEVGGLTPLLSLLKNSKDEATHRVAASAIANLAMNETNQDLIAAQGGINLLSMVAANAEDPQTLRMVAGAFANLFGNGKLLILSHF 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7868g00001 311 Pfam Armadillo/beta-catenin-like repeat 220 258 IPR000225 GO:0005515
Vium7868g00001 311 Coils Coil 104 138 - -
Vium7868g00001 311 SMART arm_5 260 301 IPR000225 GO:0005515
Vium7868g00001 311 SMART arm_5 218 259 IPR000225 GO:0005515
Vium7868g00001 311 SMART arm_5 176 217 IPR000225 GO:0005515
Vium7868g00001 311 Gene3D - 92 306 IPR011989 -
Vium7868g00001 311 Coils Coil 59 79 - -
Vium7868g00001 311 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 229 272 IPR000225 GO:0005515
Vium7868g00001 311 SUPERFAMILY ARM repeat 181 301 IPR016024 -
Vium7868g00001 311 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 188 230 IPR000225 GO:0005515
Vium7868g00001 311 PANTHER VACUOLAR PROTEIN 8 172 299 IPR045156 GO:0043495|GO:0071562
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7868g00001 Vium-Chr7868 6404 8913 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7868g00001 188 276 U-box Gene Family AT3G54790 36.170 8.81e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7868g00001 - - vum:124846017 601.668