Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7863g00024 ATGGATTTTCAAGTGGTGGTTCTCGGCGGTGGCGTCTCCAAGAAGCTCCTCCCCCTCGTTTCTCAGGAGCTTCCGAACGCGTTGCTTCCGGTGGCGAATCGCCCCGTTATCTCTTACGTTCTCGAGTACTTGGAGCTTAGCAACCTCAAAGATCTCATTGTGGTGATTGAAGGCGAAGAAGCGGCACTTCGTGTTGGGGCTTGGATTTCAGGGGCTTATGCTGATCGCCTCCATGTTGAGGTTGCTGCAGTTCCTGAGGATGTGGGTACAGCAGGTGCAATTCGGGCTATTTCTCATCACCTAACTGCTAAAGACATTTTGGTTGTCAGTGGTGATCTTGTTACGGATGTGCCACTTGGTGCTGTTGCAGCTACTCATAGACGACATGATGCAGTTGTTACTGCTATGCTCTGCTCTGCTCCTGTGAGTGGACCTTCAGAGTCAGTATCTTCTGGTGGGAAAGACAAAACCAAGAAACCTGGCCGCTATGATTTGATAGGGCTGGATCCCACAAAGCAATTTTTAGTTCACATAGCAACTGGAGCAGAAGTTGAGAAGGATCTTCGAATTCAGAAGAGCATACTCCCTGCAGTTGGCCAGATAGAAATAAGAGCTGATCTGATGGATGCCCACTTGTATGCGTTCAAAAGATCAGTTCTACAAGAAGTTCTAGATCAGAAAAGTGCATTTCATAGCTTAAAGCATGATGTATTGCCATATCTAGTCCGGAGCCAACTGGTAATAGGAGAGGCTAGCCATTTATCAGGTTATTCTTTCTCTGCCCAAAACAACATTATCCATCCTTCTGCAGAGCTTGGGGCAAAAACAACTGTTGGACCACATTGTATGTTGGGGGAAGGTTCACAAATGGGTGACAAATGCAGTGTGAAACGGTCTGTCATTGGCCGTCATTGTCGGATAGGTGCCAATGTTAAGGTTGTTAATTCAGTAGTTATGAATCATGTTTCTATTGGAGACTGTTGTTCAATCCAAGGTTCTGTTATCTGTAGCAATGTACAGCTCCAAGAACGTGCAGTAGTAAAAGATTGTCAAGTTGGAGCAGGTTATGTGGTCACTGCTGGTAGTGAGTGCAAGGGAGAGGTCTTAGCTAAGAAATGA 1119 0.4611 MDFQVVVLGGGVSKKLLPLVSQELPNALLPVANRPVISYVLEYLELSNLKDLIVVIEGEEAALRVGAWISGAYADRLHVEVAAVPEDVGTAGAIRAISHHLTAKDILVVSGDLVTDVPLGAVAATHRRHDAVVTAMLCSAPVSGPSESVSSGGKDKTKKPGRYDLIGLDPTKQFLVHIATGAEVEKDLRIQKSILPAVGQIEIRADLMDAHLYAFKRSVLQEVLDQKSAFHSLKHDVLPYLVRSQLVIGEASHLSGYSFSAQNNIIHPSAELGAKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGANVKVVNSVVMNHVSIGDCCSIQGSVICSNVQLQERAVVKDCQVGAGYVVTAGSECKGEVLAKK 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7863g00024 372 MobiDBLite consensus disorder prediction 142 162 - -
Vium7863g00024 372 SUPERFAMILY Nucleotide-diphospho-sugar transferases 4 338 IPR029044 -
Vium7863g00024 372 PANTHER TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT GAMMA 1 246 - -
Vium7863g00024 372 Gene3D Hexapeptide repeat proteins 261 370 - -
Vium7863g00024 372 Pfam Nucleotidyl transferase 6 145 IPR005835 GO:0009058
Vium7863g00024 372 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 1 260 IPR029044 -
Vium7863g00024 372 CDD LbH_eIF2B_gamma_C 283 363 - -
Vium7863g00024 372 CDD eIF-2B_gamma_N 3 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7863g00024 Vium-Chr7863 154402 158492 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7863g00024 3 363 Eukaryotic Initiation Factors Gene Family AT2G34970 22.917 2.31e-20 90.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7863g00024 K03241 - gmx:100799460 513.072