Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7863g00023 ATGGATTTTCAAGTGGTGGTTCTCGGCGGTGGCGTCTCCAAGAAGCTCCTCCCCCTCGTTTCTCAGGAGCTTCCGAACGCGTTGCTTCCGGTGGCGAATCGCCCCGTTATCTCTTACGTTCTCGAGTACTTGGAGCTTAGCAACCTCAAAGATCTCATTGTGGTGATTGAAGGCGAAGAAGCGGCACTTCGTGTTGGGGCTTGGATTTCAGGGGCTTATGCTGATCGCCTCCATGTTGAGGTTGCTGCAGTTCCTGAGGATGTGGGTACAGCAGGTGCAATTCGGGCTATTTCTCATCACCTAACTGCTAAAGACATTTTGGTTGTCAGTGGTGATCTTGTTACGGATGTGCCACTTGGTGCTGTTGCAGCTACTCATAGACGACATGATGCAGTTGTTACTGCTATGCTCTGCTCTGCTCCTGTGAGTGGACCTTCAGAGTCAGTATCTTCTGGTGGGAAAGACAAAACCAAGAAACCTGGCCGCTATGATTTGATAGGGCTGGATCCCACAAAGCAGTTTTTAGTTCACATAGCAACTGGAGCAGAAGTTGAGAAGGATCTTCGAATTCAGAAGAGCATACTCCCTGCAGTTGGCCAGATAGAAATAAGAGCTGATCTGATGGATGCCCACTTGTATGCGTTCAAAAGATCAGTTCTACAAGAAGTTCTAGATCAGAAAAGTGCATTTCATAGCTTAAAGCATGATGTATTGCCATATCTAGTCCGGAGCCAACTGAAATCAGAAGTATTATTTAATGGTATGCCACAAGTGGAAGAAAATGGAACTGAAAAGGTTATATCTCAGAGCAATCAACAAATGCTATCTCAAATACTTGCTAATGCATCTGAACCAACCTTTCATCTACGGCATGCACTGGGTTCGTATAGTTCTACTTCTGATCGAAAAACCCACAAATGCTGTGTGTATATTGCTGGAAGCAGCAAGTACTGTGCTCGCTTAAATTCTATACAAGCATACAATGACATAAACCGAGATGTAATAGGAGAGGCTAGCCATTTATCAGGTTATTCTTTCTCTGCCCAAAACAACATTATCCATCCTTCTGCAGAGCTTGGGGCAAAAACAACTGTTGGACCACATTGTATGTTGGGGGAAGGTTCACAAATGGGTGACAAATGCAGTGTGAAACGGTCTGTCATTGGCCGTCATTGTCGGATAGGTGCCAATGTTAAGGTTGTTAATTCAGTAGTTATGAATCATGTTTCTATTGGAGACTGTTGTTCAATCCAAGGTTCTGTTATCTGTAGCAATGTACAGCTCCAAGAACGTGCAGTAGTAAAAGATTGTCAAGTTGGAGCAGGTTATGTGGTCACTGCTGGTAGTGAGTGCAAGGGAGAGGTCTTAGCTAAGAAATGA 1380 0.4457 MDFQVVVLGGGVSKKLLPLVSQELPNALLPVANRPVISYVLEYLELSNLKDLIVVIEGEEAALRVGAWISGAYADRLHVEVAAVPEDVGTAGAIRAISHHLTAKDILVVSGDLVTDVPLGAVAATHRRHDAVVTAMLCSAPVSGPSESVSSGGKDKTKKPGRYDLIGLDPTKQFLVHIATGAEVEKDLRIQKSILPAVGQIEIRADLMDAHLYAFKRSVLQEVLDQKSAFHSLKHDVLPYLVRSQLKSEVLFNGMPQVEENGTEKVISQSNQQMLSQILANASEPTFHLRHALGSYSSTSDRKTHKCCVYIAGSSKYCARLNSIQAYNDINRDVIGEASHLSGYSFSAQNNIIHPSAELGAKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGANVKVVNSVVMNHVSIGDCCSIQGSVICSNVQLQERAVVKDCQVGAGYVVTAGSECKGEVLAKK 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7863g00023 459 SUPERFAMILY Nucleotide-diphospho-sugar transferases 4 425 IPR029044 -
Vium7863g00023 459 PANTHER TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT GAMMA 1 459 - -
Vium7863g00023 459 MobiDBLite consensus disorder prediction 142 162 - -
Vium7863g00023 459 Pfam Nucleotidyl transferase 6 145 IPR005835 GO:0009058
Vium7863g00023 459 Gene3D Hexapeptide repeat proteins 348 457 - -
Vium7863g00023 459 CDD LbH_eIF2B_gamma_C 370 450 - -
Vium7863g00023 459 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 1 347 IPR029044 -
Vium7863g00023 459 CDD eIF-2B_gamma_N 3 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7863g00023 Vium-Chr7863 154402 161429 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7863g00023 288 450 Eukaryotic Initiation Factors Gene Family AT4G18300 26.667 3.52e-12 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7863g00023 K03241 - gmx:100799460 838.18