Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7857g00004 ATGCCAGGCTTCACCATTAAGATCACTCGGGCCTTTTCATCCAGCCATCCAACTATGACCACCCCTTCCTCCTTCCTTGCATCCATACTCGCCCTTGCTTTCTTCTTAGCAGCTTTGCCACAATCCTACTCTCAACAAAACAACACCTACTCCATTTGCAGCCAATCTTTCAGCTGTGGAACTCTCACAAACCTATCCTATCCTTTCTGGGGAGGGAGCCGACCCCAGTTTTGTGGCCGCAATGGCTTCAACCTCACCTGCATGGATAACCGAAACGCTTCGCTTCAAGTTGGTTCCATGAACTTCCATGTACTACACATCAACCAAACGGCTTCCACCATGAGAATGGTGCGAACAGACCTTGTCTATGATCGCTGCTCTTCCAACTTCACCAACACTTCTCTCAGTTCCAGTCCCTTTTCTTTCCTCCCCACCGTCCAGAATGTCACTATATTCTACGATTGCCCCTCTCAGGATTCTGTCGGGGGAAACTCCTTTACGTGTCAGAATGATACTGATAAACACGCTTTCTATGTGGTCAATGGAACTCAGCTGAGGCAGTTCCCGGGCCTTCAGAACTGCGGGGTTAGCGTTCTGGTGCAAGTTTCAGAGGGTGTTGTTTGGGATTCTGGGAACGGGATTGAGCCGCTGAAGAAAGCGTTGGATCAAGGGTTTGATGTGAAGTTTGATGCAGAGTGGAGTTCTCAGTGCACAGCGTGCAGGGATTCCGGAGGAGCATGTGGAACGAATGAGAATGATTCCGATCAGTTTTCTTGTTATTGCTCGGGTGGAACTCGGGGTTCAGTTTGCTCTACTCACGAAAGTAGCAGGAATAGCAGAGTGTTGAAGCTGGTTTTAGGTTTCGTTGGTACTGGATTTGCACTACCTCTAATCGCTGTCATCATATGCCGCAACAAAGCTAGAATTTGGAAATTTATATTGATACAATTGGGCAAGATAAAAAAGAATGATCGAGTTATAGAAGCCTTCCTTGAAAGCCAAGGTTCTATGGGTATAAAGAGATACAGTTTCTCTGATGTTAAGAAAATGACCGACTCCTTCAAAATTAAGCTGGGGGAAGGTGGTTATGGATCTGTGTACAAAGGAAAGTTACTCAACGGTTGTTCGGTGGCAGTGAAGATACTGAACGAATCAAAGGAGAATGGCGAAGAGTTTATCAATGAGGTTGCAAGCATAAGCAAAACATCTCATGTTAACATTGTCTCTCTCCTTGGATTCTGCCTAGATGGAAGCAGAAAAGCCCTCGTGTATGAGTTTATGTCCAATGGTTCACTTGAGAAGTACATTCACAAGAAAGCAGCAGAAAAAAATAAAACCAGTACTCCACCATTGGGTTGGGACAGATTGAACCAGATTGCAATAGGCATAGCTCGAGGACTTGAGTATTTGCATAAAGGATGCAACACTCGGATTCTGCATTTTGACATCAAGCCACATAACATCCTTTTGGACGAAACTTATCGCCCAAAGATATCAGATTTTGGACTTGCTAAGCTGAGCACAATAGATGAAAGCATTATATCAATGTCAAATGCTAGAGGAACAGTAGGGTATGTGGCTCCTGAGGTGTTCAATAAAAGTTTTGGAGGTGTTTCACACAAGTCTGATGTTTACAGCTATGGAATGATGCTACTAGAAATGGTTGGAGGACAGAAGAACATCAACGTTGAAGCTAGTCGCTCAAGCGAACTGTATTTCCCACATTTGGTTATTTACAAGAAGCTTGAGCAGGGCAATGATTTGGGACTTGATGGGATATTGTCTGGTGAGGAGAATGAGATAGCAAAGAGAATGACTATGGTGGCTTTGTGGTGCATTCAGACAATTCCTTCTCACAGACCTACCATAAGTAGAGTGATTGACATGTTGTTAGGTAGTGCAGATTCCTTGGAAATGCCACCAAAACCTTTCCTCTCTTCTCCTCCAAGATCAACAGGTTTTTCCACTGCAATATCCGAATCATTTGATAGTCTCTCATGCAGCTCATAG 2010 0.4433 MPGFTIKITRAFSSSHPTMTTPSSFLASILALAFFLAALPQSYSQQNNTYSICSQSFSCGTLTNLSYPFWGGSRPQFCGRNGFNLTCMDNRNASLQVGSMNFHVLHINQTASTMRMVRTDLVYDRCSSNFTNTSLSSSPFSFLPTVQNVTIFYDCPSQDSVGGNSFTCQNDTDKHAFYVVNGTQLRQFPGLQNCGVSVLVQVSEGVVWDSGNGIEPLKKALDQGFDVKFDAEWSSQCTACRDSGGACGTNENDSDQFSCYCSGGTRGSVCSTHESSRNSRVLKLVLGFVGTGFALPLIAVIICRNKARIWKFILIQLGKIKKNDRVIEAFLESQGSMGIKRYSFSDVKKMTDSFKIKLGEGGYGSVYKGKLLNGCSVAVKILNESKENGEEFINEVASISKTSHVNIVSLLGFCLDGSRKALVYEFMSNGSLEKYIHKKAAEKNKTSTPPLGWDRLNQIAIGIARGLEYLHKGCNTRILHFDIKPHNILLDETYRPKISDFGLAKLSTIDESIISMSNARGTVGYVAPEVFNKSFGGVSHKSDVYSYGMMLLEMVGGQKNINVEASRSSELYFPHLVIYKKLEQGNDLGLDGILSGEENEIAKRMTMVALWCIQTIPSHRPTISRVIDMLLGSADSLEMPPKPFLSSPPRSTGFSTAISESFDSLSCSS 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7857g00004 669 ProSitePatterns Protein kinases ATP-binding region signature. 358 380 IPR017441 GO:0005524
Vium7857g00004 669 PANTHER RUST RESISTANCE KINASE LR10-RELATED 324 647 IPR045874 GO:0004672
Vium7857g00004 669 SUPERFAMILY Protein kinase-like (PK-like) 332 630 IPR011009 -
Vium7857g00004 669 FunFam PR5-like receptor kinase 427 642 - -
Vium7857g00004 669 SMART serkin_6 352 630 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium7857g00004 669 Gene3D Phosphorylase Kinase; domain 1 328 426 - -
Vium7857g00004 669 Pfam Wall-associated receptor kinase C-terminal 169 263 IPR032872 -
Vium7857g00004 669 Gene3D Transferase(Phosphotransferase) domain 1 427 639 - -
Vium7857g00004 669 ProSitePatterns Serine/Threonine protein kinases active-site signature. 478 490 IPR008271 GO:0004672|GO:0006468
Vium7857g00004 669 Pfam Protein kinase domain 357 627 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium7857g00004 669 ProSitePatterns EGF-like domain signature 1. 259 270 IPR000742 -
Vium7857g00004 669 ProSiteProfiles Protein kinase domain profile. 352 645 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium7857g00004 669 Pfam Wall-associated receptor kinase galacturonan-binding 53 118 IPR025287 GO:0030247
Vium7857g00004 669 FunFam serine/threonine-protein kinase PBS1-like 321 426 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7857g00004 Vium-Chr7857 33750 44591 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7857g00004 31 643 Receptor kinase-like Gene Family AT5G38260 40.472 4.74e-145 434
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vium7857g00004 Pkinase 1.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7857g00004 - - vra:106766588 1281.93