Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7855g00013 ATGGAAATTGATCTGAACTATGCAGTGACTGAGCCTGAGAAGACCGCGTCTTGCAATGGGGACTGTGACAAAGGTGCTGCTTGCGTTTGCTCTCTGTCCTCTCCTACTTGTTCATCTTCTGGTTCCTCCTCCGCACGTGTGTCCTCCTCTTATCTTGAGCTCTGGCACGCTTGTGCTGGCCCCCTCACTTCCCTCCCAAAGAAAGGGAATGTGGTCGTGTATTTTCCACAAGGGCACTTAGAACAAGCTTCATCTTTCTCTCCCTTTTCACCAATGGACATGCCAACCTATGATCTTCAGCCACAGATCTTCTGTAGAGTTGTCAATATTCAGTTACTTGCCAATAAGGAGAATGATGAGGTTTATACACAGGTTACTTTGCTTCCCCAGGCTGAGTTGGCAGGGATGTATTTGGAGGGAAAAGAGATTGAGGAATTGGGAGCAGATGAAGAAGGAAATGAAACAACACCTACAAAATCAACTCCTCACATGTTCTGCAAAACACTCACAGCCTCAGACACCAGCACTCATGGGGGTTTTTCTGTCCCTCGCAGAGCTGCTGAAGACTGTTTTCCTCCTTTGGATTATAAGCAGCAAAGACCCTCTCAGGAGCTTGTTGCCAAGGACCTGCATAATGTAGAGTGGAAATTTCGACATATTTACAGAGGTCAGCCAAGGAGGCATCTGCTCACTACTGGCTGGAGTATCTTCGTTAGCCAAAAGAATCTTGTTTCTGGAGATGCAGTTCTCTTTCTGAGGGGTGAAAATGGAGAATTGAGATTGGGAATCCGAAGAGCTGCTCGACCAAGAAATGGTCTTCCTGAATCAATTGTTGGTAGCCAGAATTATTATCCCAATTTCCTTTCTTCTGTGGCCAATGCTATATCCTCCAAAAGCATGTTTCATGTTTTCTACAGTCCAAGAGCAATTCATGCGGATTTTGTTGTGCCCTACCACAAATATGTCAAAAGCATAAAGAATCCAGTGACCATTGGGACAAGATTCAAAGTGAGATTTGAAATGGATGAATCTCCCGAGAGAAGGTGTACTAGTGGTATAGTGACTGGAATGAGTGATTTGGATCCCTATAAATGGCCTAAGTCAAGATGGAGGTGCTTGATGGTCAGATGGGATGAAGATATTGAGATTAATCATCAAGATAGAGTATCGCCTTGGGAGATCGATCCTTCGGCATCTCTCCCTCCGTTGAGCATTCAATCCTCCAGAAGGCTGAAGAAACTGAGGTCAGGTCTGCAGGGTGCTTCACCCAGTCACCTCATCACAGGAGGCAGTGGGTTTATGGACTCTGAGGAGTCTGTAAGATCATCCAAGGTCTTGCAAGGTCAAGAAAAGTCAGGTTTTATGTCACTGTATTATGGATGTGACACAGTAACTAAGCAGCCAGAATTTGAGATCAGATCTCCAAGTCATCCAAATTTTGCATCATCAACTGGAGTGAGAAAGATTGCTGCTGGTGAGTTTATGAGGGTCCACCCTCCTAGTTATGCAGGCTTCACGGAACCTAACAGGTTTCCAAGGGTCTTGCAAAGTCAAGAAATATGTCAGTTGAGATCTCTGACAGGAAAGGTTGATTTGAACTTTGGTGCCTGGGGCAAACCCAGTGTCAGTTTCACAAATTACAACCTGCAACAGGCAACCAAACCCAACTTCCACTCTTTAGGACCAGAAGTTATTCAAACTGCATATTTTCCTTATGGTGATATTCACAAAGCTGGCCAAGGTAGCGGCACCAGCATGTTGTGCTCTAAACCTACCAATTTCCAGCGAGAGAATGTTCCATTTAACTCTCCTTCCTCTCAGTCAGGGATCATGAGAAATGAAGTTGGACGAGCAGAAGTCACAATCCAAAATGAGCAGAAGCTGCAGGACAATATTTCTGGTGCTGCTTCTTTAGGTACAAACGTGAGGATTCCAAATGATGATAATTTCAATGGGAAGGTAAATGCTTGTAAACTATTTGGATTTCCCTTGTCCGGGGAAGCCACCACCCAAAATTTACAGAACTCAGCTAAAAGAAGTTGCACAAAGGTTCACAAGCAAGGTAGCTTAGTTGGAAGAGCCATTGATCTCTCAAGATTGAACAGCTACAGTGACCTGCTGATTGAACTAGAGAGACTATTTAGCATGGAAGGCCTTCTAAGAGATCCTAACAAGGGATGGAGAATCCTATACACTGACAGTGAAAATGACATTATGGTTGTGGGAGATGACCCGTGGCATGAGTTCTGCGAGGTGGTCTCGAAGATTCATATCCATACACAAGAAGAAGTTGAGAAGATGACAATTGGGATGATGAATGATGATACCCAGAGCTGTTTGGAACAGGCACCAGTGATGATAGAGGCTTCAAAGTCTTCTTCTGTGGGTCAGCCAGATTCTTCTCCGACAGTGGTTAGAATCTAG 2424 0.446 MEIDLNYAVTEPEKTASCNGDCDKGAACVCSLSSPTCSSSGSSSARVSSSYLELWHACAGPLTSLPKKGNVVVYFPQGHLEQASSFSPFSPMDMPTYDLQPQIFCRVVNIQLLANKENDEVYTQVTLLPQAELAGMYLEGKEIEELGADEEGNETTPTKSTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYKQQRPSQELVAKDLHNVEWKFRHIYRGQPRRHLLTTGWSIFVSQKNLVSGDAVLFLRGENGELRLGIRRAARPRNGLPESIVGSQNYYPNFLSSVANAISSKSMFHVFYSPRAIHADFVVPYHKYVKSIKNPVTIGTRFKVRFEMDESPERRCTSGIVTGMSDLDPYKWPKSRWRCLMVRWDEDIEINHQDRVSPWEIDPSASLPPLSIQSSRRLKKLRSGLQGASPSHLITGGSGFMDSEESVRSSKVLQGQEKSGFMSLYYGCDTVTKQPEFEIRSPSHPNFASSTGVRKIAAGEFMRVHPPSYAGFTEPNRFPRVLQSQEICQLRSLTGKVDLNFGAWGKPSVSFTNYNLQQATKPNFHSLGPEVIQTAYFPYGDIHKAGQGSGTSMLCSKPTNFQRENVPFNSPSSQSGIMRNEVGRAEVTIQNEQKLQDNISGAASLGTNVRIPNDDNFNGKVNACKLFGFPLSGEATTQNLQNSAKRSCTKVHKQGSLVGRAIDLSRLNSYSDLLIELERLFSMEGLLRDPNKGWRILYTDSENDIMVVGDDPWHEFCEVVSKIHIHTQEEVEKMTIGMMNDDTQSCLEQAPVMIEASKSSSVGQPDSSPTVVRI 807
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7855g00013 807 CDD B3_DNA 163 265 IPR003340 GO:0003677
Vium7855g00013 807 Pfam AUX/IAA family 671 763 IPR033389 -
Vium7855g00013 807 ProSiteProfiles PB1 domain profile. 679 761 IPR000270 GO:0005515
Vium7855g00013 807 FunFam Auxin response factor 328 401 - -
Vium7855g00013 807 ProSiteProfiles B3 DNA-binding domain profile. 165 267 IPR003340 GO:0003677
Vium7855g00013 807 SUPERFAMILY CAD & PB1 domains 682 758 - -
Vium7855g00013 807 Gene3D - 163 267 IPR015300 -
Vium7855g00013 807 FunFam Auxin response factor 674 768 - -
Vium7855g00013 807 Gene3D - 329 401 - -
Vium7855g00013 807 FunFam Auxin response factor 163 267 - -
Vium7855g00013 807 Gene3D - 675 768 - -
Vium7855g00013 807 Pfam Auxin response factor 291 373 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vium7855g00013 807 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 50 768 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vium7855g00013 807 SMART B3_2 165 267 IPR003340 GO:0003677
Vium7855g00013 807 Pfam B3 DNA binding domain 165 266 IPR003340 GO:0003677
Vium7855g00013 807 SUPERFAMILY DNA-binding pseudobarrel domain 156 277 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7855g00013 Vium-Chr7855 24195 30578 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7855g00013 47 807 B3 DNA Binding Superfamily AT5G60450 60.338 0.0 865
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vium7855g00013 AUX_IAA 5.9e-07 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7855g00013 - - gmx:100812909 1430.62