Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7855g00012 ATGGAAATTGATCTGAACTATGCAGTGACTGAGCCTGAGAAGACCGCGTCTTGCAATGGGGACTGTGACAAAGGTGCTGCTTGCGTTTGCTCTCTGTCCTCTCCTACTTGTTCATCTTCTGGTTCCTCCTCCGCACGTGTGTCCTCCTCTTATCTTGAGCTCTGGCACGCTTGTGCTGGCCCCCTCACTTCCCTCCCAAAGAAAGGGAATGTGGTCGTGTATTTTCCACAAGGGCACTTAGAACAAGCTTCATCTTTCTCTCCCTTTTCACCAATGGACATGCCAACCTATGATCTTCAGCCACAGATCTTCTGTAGAGTTGTCAATATTCAGTTACTTGCCAATAAGGAGAATGATGAGGTTTATACACAGGTTACTTTGCTTCCCCAGGCTGAGTTGGCAGGGATGTATTTGGAGGGAAAAGAGATTGAGGAATTGGGAGCAGATGAAGAAGGAAATGAAACAACACCTACAAAATCAACTCCTCACATGTTCTGCAAAACACTCACAGCCTCAGACACCAGCACTCATGGGGGTTTTTCTGTCCCTCGCAGAGCTGCTGAAGACTGTTTTCCTCCTTTGGATTATAAGCAGCAAAGACCCTCTCAGGAGCTTGTTGCCAAGGACCTGCATAATGTAGAGTGGAAATTTCGACATATTTACAGAGGTCAGCCAAGGAGGCATCTGCTCACTACTGGCTGGAGTATCTTCGTTAGCCAAAAGAATCTTGTTTCTGGAGATGCAGTTCTCTTTCTGAGGGGTGAAAATGGAGAATTGAGATTGGGAATCCGAAGAGCTGCTCGACCAAGAAATGGTCTTCCTGAATCAATTGTTGGTAGCCAGAATTATTATCCCAATTTCCTTTCTTCTGTGGCCAATGCTATATCCTCCAAAAGCATGTTTCATGTTTTCTACAGTCCAAGAGCAATTCATGCGGATTTTGTTGTGCCCTACCACAAATATGTCAAAAGCATAAAGAATCCAGTGACCATTGGGACAAGATTCAAAGTGAGATTTGAAATGGATGAATCTCCCGAGAGAAGGTGTACTAGTGGTATAGTGACTGGAATGAGTGATTTGGATCCCTATAAATGGCCTAAGTCAAGATGGAGGTGCTTGATGGTCAGATGGGATGAAGATATTGAGATTAATCATCAAGATAGAGTATCGCCTTGGGAGATCGATCCTTCGGCATCTCTCCCTCCGTTGAGCATTCAATCCTCCAGAAGGCTGAAGAAACTGAGGTCAGGTCTGCAGGGTGCTTCACCCAGTCACCTCATCACAGCAGGAGGCAGTGGGTTTATGGACTCTGAGGAGTCTGTAAGATCATCCAAGGTCTTGCAAGGTCAAGAAAAGTCAGGTTTTATGTCACTGTATTATGGATGTGACACAGTAACTAAGCAGCCAGAATTTGAGATCAGATCTCCAAGTCATCCAAATTTTGCATCATCAACTGGAGTGAGAAAGATTGCTGCTGGTGAGTTTATGAGGGTCCACCCTCCTAGTTATGCAGGCTTCACGGAACCTAACAGGTTTCCAAGGGTCTTGCAAAGTCAAGAAATATGTCAGTTGAGATCTCTGACAGGAAAGGTTGATTTGAACTTTGGTGCCTGGGGCAAACCCAGTGTCAGTTTCACAAATTACAACCTGCAACAGGCAACCAAACCCAACTTCCACTCTTTAGGACCAGAAGTTATTCAAACTGCATATTTTCCTTATGGTGATATTCACAAAGCTGGCCAAGGTAGCGGCACCAGCATGTTGTGCTCTAAACCTACCAATTTCCAGCGAGAGAATGTTCCATTTAACTCTCCTTCCTCTCAGTCAGGGATCATGAGAAATGAAGTTGGACGAGCAGAAGTCACAATCCAAAATGAGCAGAAGCTGCAGGACAATATTTCTGGTGCTGCTTCTTTAGGTACAAACGTGAGGATTCCAAATGATGATAATTTCAATGGGAAGGTAAATGCTTGTAAACTATTTGGATTTCCCTTGTCCGGGGAAGCCACCACCCAAAATTTACAGAACTCAGCTAAAAGAAGTTGCACAAAGGTTCACAAGCAAGGTAGCTTAGTTGGAAGAGCCATTGATCTCTCAAGATTGAACAGCTACAGTGACCTGCTGATTGAACTAGAGAGACTATTTAGCATGGAAGGCCTTCTAAGAGATCCTAACAAGGGATGGAGAATCCTATACACTGACAGTGAAAATGACATTATGGTTGTGGGAGATGACCCGTGGCATGAGTTCTGCGAGGTGGTCTCGAAGATTCATATCCATACACAAGAAGAAGTTGAGAAGATGACAATTGGGATGATGAATGATGATACCCAGAGCTGTTTGGAACAGGCACCAGTGATGATAGAGGCTTCAAAGTCTTCTTCTGTGGGTCAGCCAGATTCTTCTCCGACAGTGGTTAGAATCTAG 2427 0.4462 MEIDLNYAVTEPEKTASCNGDCDKGAACVCSLSSPTCSSSGSSSARVSSSYLELWHACAGPLTSLPKKGNVVVYFPQGHLEQASSFSPFSPMDMPTYDLQPQIFCRVVNIQLLANKENDEVYTQVTLLPQAELAGMYLEGKEIEELGADEEGNETTPTKSTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYKQQRPSQELVAKDLHNVEWKFRHIYRGQPRRHLLTTGWSIFVSQKNLVSGDAVLFLRGENGELRLGIRRAARPRNGLPESIVGSQNYYPNFLSSVANAISSKSMFHVFYSPRAIHADFVVPYHKYVKSIKNPVTIGTRFKVRFEMDESPERRCTSGIVTGMSDLDPYKWPKSRWRCLMVRWDEDIEINHQDRVSPWEIDPSASLPPLSIQSSRRLKKLRSGLQGASPSHLITAGGSGFMDSEESVRSSKVLQGQEKSGFMSLYYGCDTVTKQPEFEIRSPSHPNFASSTGVRKIAAGEFMRVHPPSYAGFTEPNRFPRVLQSQEICQLRSLTGKVDLNFGAWGKPSVSFTNYNLQQATKPNFHSLGPEVIQTAYFPYGDIHKAGQGSGTSMLCSKPTNFQRENVPFNSPSSQSGIMRNEVGRAEVTIQNEQKLQDNISGAASLGTNVRIPNDDNFNGKVNACKLFGFPLSGEATTQNLQNSAKRSCTKVHKQGSLVGRAIDLSRLNSYSDLLIELERLFSMEGLLRDPNKGWRILYTDSENDIMVVGDDPWHEFCEVVSKIHIHTQEEVEKMTIGMMNDDTQSCLEQAPVMIEASKSSSVGQPDSSPTVVRI 808
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7855g00012 808 CDD B3_DNA 163 265 IPR003340 GO:0003677
Vium7855g00012 808 Pfam B3 DNA binding domain 165 266 IPR003340 GO:0003677
Vium7855g00012 808 FunFam Auxin response factor 675 769 - -
Vium7855g00012 808 FunFam Auxin response factor 328 401 - -
Vium7855g00012 808 ProSiteProfiles B3 DNA-binding domain profile. 165 267 IPR003340 GO:0003677
Vium7855g00012 808 SUPERFAMILY CAD & PB1 domains 683 759 - -
Vium7855g00012 808 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 50 769 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vium7855g00012 808 Pfam AUX/IAA family 672 764 IPR033389 -
Vium7855g00012 808 Gene3D - 676 769 - -
Vium7855g00012 808 Gene3D - 329 401 - -
Vium7855g00012 808 FunFam Auxin response factor 163 267 - -
Vium7855g00012 808 Gene3D - 163 267 IPR015300 -
Vium7855g00012 808 Pfam Auxin response factor 291 373 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vium7855g00012 808 ProSiteProfiles PB1 domain profile. 680 762 IPR000270 GO:0005515
Vium7855g00012 808 SMART B3_2 165 267 IPR003340 GO:0003677
Vium7855g00012 808 SUPERFAMILY DNA-binding pseudobarrel domain 156 277 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7855g00012 Vium-Chr7855 24195 30584 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7855g00012 47 808 B3 DNA Binding Superfamily AT5G60450 60.078 0.0 863
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vium7855g00012 AUX_IAA 5.9e-07 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7855g00012 - - gmx:100812909 1435.24