Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7852g00001 ATGGAGGAGCCTATTGTGTTGAACAAAGGTGAGGAGCCTCTAGATTTGCCTCCAGGTTTCAGGTTTCACCCCACTGATGAGGAGATAATTACTCATTATCTCACTGAGAAGGTGAAGGATAGTAGTTTCGGTGCAATTGCTATTGGAGAGGCTGATTTGAACAAGTGCGAACCTTGGGATTTGCCCAAGAGAGCCAAGATAGGGGAGAAAGAGTGGTACTTCTTCTGCCAAAAGGATAGAAAGTATCCAACCGGTATGAGAACCAATAGAGCAACAGAATCTGGGTACTGGAAGGCCACTGGAAAAGATAAGGAGATTTACAAAGGGAAAGGCAACCTTGTTGGGATGAAGAAGACCCTTGTGTTCTATAGAGGGAGAGCTCCAAAGGGTGAGAAGACCAATTGGGTCATGCATGAATTCAGATTGGAGGGCAAATTTGCAAGTTACAATCTTCCCAAGGCAGCAAAGGACGAATGGGTTGTGTCAAGGGTTTTTCACAAGAACACAGATGTCAAAAAGTCCTCAATTCCTGGCCTTCTGAGGATAAACTCTATTGGGGATGATCTTCTTGATTATTCTTCACTTCCACCTCTCATGGATCCTCCTTATGGCAACACCAACACCACTAACCCACTTTCATCAACTAAATCACAATCGGAGGGCTATTATCTTCCCAGTTTCTCCATCAACAACCATCACCAGCTTCTCATCAAGCCAGAAGACCACCACAGAAGCTATGAGATTCCCACAATCAGTTACACCTCCAACCAAGCCAATCTCAGCAACACCGTTAACCCAATTGGAAGCAACGCACTCTCACAACCTTCAAACATGTTCTCTGATTACTACGTGCACCAAAACAGGATCAGAAGTTCCATCATGCCGAGTATTGAAGGCTCAGGTTTCGGTACCAACCACGATCAAGCTATCCTTAGAGCATTTGCAGCCAAGAACAACGAGCATTTGGGTGGAATCTTGGAGAAACAGTGCAAGATGGAACAATTCTCCTCTAACCACTCACAAGACACAGGCTTAAGCAACGACAGAAACACGGAAACATCCTCGGTGGTTTCGAAGCAGGACAACATGGGAAGAAATCGGACATTGTACGAGGATCTTGAAGGTCCTCCTTCAGTTGCACCTCTCTCAGATTTGGAATGCTTGTGGGATGACTACTGA 1179 0.4529 MEEPIVLNKGEEPLDLPPGFRFHPTDEEIITHYLTEKVKDSSFGAIAIGEADLNKCEPWDLPKRAKIGEKEWYFFCQKDRKYPTGMRTNRATESGYWKATGKDKEIYKGKGNLVGMKKTLVFYRGRAPKGEKTNWVMHEFRLEGKFASYNLPKAAKDEWVVSRVFHKNTDVKKSSIPGLLRINSIGDDLLDYSSLPPLMDPPYGNTNTTNPLSSTKSQSEGYYLPSFSINNHHQLLIKPEDHHRSYEIPTISYTSNQANLSNTVNPIGSNALSQPSNMFSDYYVHQNRIRSSIMPSIEGSGFGTNHDQAILRAFAAKNNEHLGGILEKQCKMEQFSSNHSQDTGLSNDRNTETSSVVSKQDNMGRNRTLYEDLEGPPSVAPLSDLECLWDDY 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7852g00001 392 ProSiteProfiles NAC domain profile. 16 167 IPR003441 GO:0003677|GO:0006355
Vium7852g00001 392 SUPERFAMILY NAC domain 13 168 IPR036093 GO:0003677|GO:0006355
Vium7852g00001 392 Gene3D NAC domain 25 172 IPR036093 GO:0003677|GO:0006355
Vium7852g00001 392 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 15 280 - -
Vium7852g00001 392 MobiDBLite consensus disorder prediction 334 364 - -
Vium7852g00001 392 MobiDBLite consensus disorder prediction 334 375 - -
Vium7852g00001 392 Pfam No apical meristem (NAM) protein 17 142 IPR003441 GO:0003677|GO:0006355
Vium7852g00001 392 FunFam NAC domain-containing protein 100-like 25 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7852g00001 Vium-Chr7852 26215 28200 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7852g00001 1 203 NAC Transcription Factor Family AT5G18270 74.057 2.99e-110 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vium7852g00001 NAM 7.9e-40 No_clan