Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7851g00002 ATGCACGTCACGTCCTCACATAGCCACATGAAAGCTGAGCTTAAGGGCACGTCCGTTTCCTTTCAAAACCCTACTACTCTCTTTAACACACCTCACAACCCTCTCTCGGGAGCACTCAAAGGGTGTCTGGGAAGCCTGGATGGAGCTTGTATTGAGAAGCTCTTGCTGCACTGTGCCAGCGCTTTGGAGAGCAACGACATCACCTTGGCTCAACAGGTCATGTGGGTGCTCAACAACGTTGCTTCCCCTGTGGGGGACACCAACCAAAGACTCACCTCGTGGTTTCTCAGAGCATTAATCTCTAGGGCTTCAAGAATTTGCCCTACTGCCATGAGTTTCAAAGGAAGCAACACCATTCAAAGGAGGCTCATGAGCGTCACCGAGCTGGCCGGGTATGTGGATCTTATTCCTTGGCATAGATTTGGGTATTGTGCATCCAATAATGAAATTTTCAAAGCAATAACGGGGTACCAAAGGGTACATATTCTAGATTTTAGTATAACCCATTGTATGCAATGGCCTACTTTTATAGATGCATTGGCCAAAAACCCTGAAGGAACTCCTTCACTCAGAATCACAGTTCCATTTTGTAGACCACACGTACCCCCCCTGGTCAATGTATCTATACATGAGGTTGGTTTACGTTTAGGGAATTTCGCCAAGTTCAGAGAAGTCCCTTTTGAATTCAACGTTATAGGAAACACGGGACCGTTAACACCTGTGGAATTGAGCGATGAATCATCTAACTTTCATTTTGAAGCAATGTTAAGTCTCTTGAATCCTACTACGCTAAACCTTAGGGAAGATGAAGCTTTGGTCATAAATTGCCAGAATTGGCTGCGCTATTTGTCTGATGATAGAAAGGGAAGCCACCAAAGTCTTTCCCTTAGGGATGCTTTTTTAAATCTAATAAAAGGTCTTAACCCCCGGATAGTGCTCTTGGTTGATGAGGATTGTGACCTTAGTGCATCTAGTCTCACGTCAAGAATCACCACATGTTTCAACCATCTTTGGATACCCTTTGACGCATTGGAGACCTTTTTGCCTAAAGATAGTGGTCAGAGGGCAGAGTTTGAATCCGACATAGGCCAGAAGATAGAGAACATCATAAGCTTTGAAGGGCACCAAAGAATCGAGAGGTTGGAGTGTGGGGTGCAAATGTCCCAAAGAATGAAAAATGTTGGTTACCTCAATGTTCCATTTTGTGATGAAACTGTTAGGGAAGTTAAAGGTTTGATAGATGAGCATGCCAGTGGGTGGGGGATGAAAAGAGAAGAAGGTATGCTAGTTCTCACATGGAAAGGAAACAGCTGTGTCTTTGCGACAGCTTGGGTCCCCTGTGAAATAAGGGATCATGTTGGAATGGATGCAAGTCTGCCTTAA 1383 0.4469 MHVTSSHSHMKAELKGTSVSFQNPTTLFNTPHNPLSGALKGCLGSLDGACIEKLLLHCASALESNDITLAQQVMWVLNNVASPVGDTNQRLTSWFLRALISRASRICPTAMSFKGSNTIQRRLMSVTELAGYVDLIPWHRFGYCASNNEIFKAITGYQRVHILDFSITHCMQWPTFIDALAKNPEGTPSLRITVPFCRPHVPPLVNVSIHEVGLRLGNFAKFREVPFEFNVIGNTGPLTPVELSDESSNFHFEAMLSLLNPTTLNLREDEALVINCQNWLRYLSDDRKGSHQSLSLRDAFLNLIKGLNPRIVLLVDEDCDLSASSLTSRITTCFNHLWIPFDALETFLPKDSGQRAEFESDIGQKIENIISFEGHQRIERLECGVQMSQRMKNVGYLNVPFCDETVREVKGLIDEHASGWGMKREEGMLVLTWKGNSCVFATAWVPCEIRDHVGMDASLP 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7851g00002 460 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 51 434 IPR005202 -
Vium7851g00002 460 ProSiteProfiles GRAS family profile. 42 445 IPR005202 -
Vium7851g00002 460 Pfam GRAS domain family 52 444 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7851g00002 Vium-Chr7851 2413 5475 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7851g00002 25 447 GRAS Transcription Factor Family AT3G49950 43.981 7.71e-117 347
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vium7851g00002 GRAS 4.6e-85 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7851g00002 - - gmx:100805056 865.914