Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7850g00001 ATGGAAGGTTCAGAGGAAGAAGAGCTTCTAAATCTTACTCTTTCGGTTGATGCAGGTGGAAAAAGGAGAAAGAAAGGAAGGACAAGGGATGATGATACTAATTCTCTTGTTATTCCTATGAAGTCCAGTGAAGGGTATGAAGGGAAGATCTTTAGGCTACTACAAATGAGGGAGCTGATGCTAAGAGAAGATCACAGAAGAAAAGGAGTGGTTGAAGATGGGAATAATGGTCTTCCTTTGATTCATTTGCTTCTTTCAACTGCCACTTCTATTGATGAGAGAAACTACTGTGCAACTCTTGAGAATCTGATTGAGTTGTATCAAACAGTTTCCCTAATAGGTGATTCAGTTCAACGTGTGGTGGCCTACTTTGCTGACGGTTTGGCTGCAAGGCTTCTCACAAGAAAGTCTCCTTTCTATGACATGGTCATGGAGGAACCAACAAGTGAGGAAGAGTTTCTTGCATTCACAGATCTCTATAGAGTCTCACCCTATTATCAATTTGCTCACTTCACAGCAAACCAGGCTATTTTGGAGGCCTATGAGGAGGAGGAAGAGAGGAACAACAAATCACTTCATGTCATTGACTTTGATGTCTCCTATGGCTTCCAATGGCCTTCTCTCATTCAATCACTTTCAGAAAAGGCAACCAGTGGCAACAGAATATCCCTCAGGATAACAGGTTTAGGGAACAACCTGAAAGAACTGCAAGAAACTGAGGCCAGATTAGTTAGCTTCTCAAAAGGGTTTAGTAACCACCTAGTGTTTGAGTTCCAAGGGCTTCTAAGAGGCTCATCAAGGCTCATCAACCTGAGGAGAAAGAAAAATGAAACTTTGGCAGTGAACCTTGTTTCTTACTTAAACACTTTGAGTAGTTTCATGAAGGTCTCGGACACATTAGGCCTAGTTCATTCTCTTGGCCCCTCCATTGTGGTGTTGGTGAAACAAGAAGGTAGCAGGAGTCTGAAGACCTTCCTGTCAAGGTTCACTGAGTCTTTGCACTATTTTGCAGCCATGTTCGATTCACTAGATGATTGCTTGCCACTTGAGAGCACTGAGAGATTGAGGATTGAGAAGAAGCTTTTGGGGAAAGAGATCAAAAGCATGCTCAACTATGACATGGATGGAGTGGATTGCCCAAAGTATGAGAGGATGGAAACATGGAAAACAAGAATGGAGAATCATGAGTTTGTGGGAAGA 1200 0.4242 MEGSEEEELLNLTLSVDAGGKRRKKGRTRDDDTNSLVIPMKSSEGYEGKIFRLLQMRELMLREDHRRKGVVEDGNNGLPLIHLLLSTATSIDERNYCATLENLIELYQTVSLIGDSVQRVVAYFADGLAARLLTRKSPFYDMVMEEPTSEEEFLAFTDLYRVSPYYQFAHFTANQAILEAYEEEEERNNKSLHVIDFDVSYGFQWPSLIQSLSEKATSGNRISLRITGLGNNLKELQETEARLVSFSKGFSNHLVFEFQGLLRGSSRLINLRRKKNETLAVNLVSYLNTLSSFMKVSDTLGLVHSLGPSIVVLVKQEGSRSLKTFLSRFTESLHYFAAMFDSLDDCLPLESTERLRIEKKLLGKEIKSMLNYDMDGVDCPKYERMETWKTRMENHEFVGR 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7850g00001 400 ProSiteProfiles GRAS family profile. 71 400 IPR005202 -
Vium7850g00001 400 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 77 397 IPR005202 -
Vium7850g00001 400 Pfam GRAS domain family 80 397 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7850g00001 Vium-Chr7850 9672 11234 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7850g00001 66 399 GRAS Transcription Factor Family AT1G14920 33.141 1.54e-44 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vium7850g00001 GRAS 1e-75 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7850g00001 - - vum:124845964 743.421