Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7849g00001 ATGATGGCCGCACCGCAACTTCACTTTCCCCCAGGATTCAGATTCCACCCTACAGACGAAGAACTCGTCGTTCATTACCTCTGCCGCAAATGCCTCAACCAACAAAGCGGCGTTCCCATAATCACCGAAATCGACCTCTACAAATACGACCCTTGGGACCTCCCTGGAATGGCGTTGTACGGAGAGAAAGAGTGGTATTTCTTCTCGCCGAGGAACCGGAAGTACCCGAATGGTTCGCGGCCGAACCGGTCCGCGGGAACCGGGTACTGGAAAGCAACCGGAGCAGATAAACCGATTGGTAAACCGAAACCGGTTGGTATAAAAAAAGCATTGGTGTTTTACGCTGGAAAAGCGCCCAAGGGAGAGAAGACAAACTGGATCATGCACGAGTATCGTCTTGCCGAGGTGGACCGTTCCATTCGCAGAAAAAACAGCTTGAGGCTGGATGACTGGGTACTGTGTCGCATATACAACAAGAAAAGGGCGGTTGAGAAGCAACCGCCGGTCAAAATTGAGTGTTCCGAACTGGCGGACGAGAAGCCGGCAATTGCGCGGCCGTACTCGGAGTTGACGGTGGCGGACTGCGTGAACTTCGAGGGATCGGACTCGGTTCCACGGCTGCTGACGATGGACTCGAGCTGCTCGGAGCAGGTGGTCTCGCCGGAGCCGGCGAGCGAGGTGCAGAGCGAGCCGAAGAGGAGCAACACCAAGTTTGAGTACAATTACGTGGACGCGAATCTGGCCTCGCAGTTCCACAGCGCGAATCAGATGTCGCCGCTGCAGGATATCTTCATGTACCTCTCAAAGCCATTTTGA 816 0.5466 MMAAPQLHFPPGFRFHPTDEELVVHYLCRKCLNQQSGVPIITEIDLYKYDPWDLPGMALYGEKEWYFFSPRNRKYPNGSRPNRSAGTGYWKATGADKPIGKPKPVGIKKALVFYAGKAPKGEKTNWIMHEYRLAEVDRSIRRKNSLRLDDWVLCRIYNKKRAVEKQPPVKIECSELADEKPAIARPYSELTVADCVNFEGSDSVPRLLTMDSSCSEQVVSPEPASEVQSEPKRSNTKFEYNYVDANLASQFHSANQMSPLQDIFMYLSKPF 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7849g00001 271 FunFam NAC transcription factor 18 163 - -
Vium7849g00001 271 SUPERFAMILY NAC domain 2 159 IPR036093 GO:0003677|GO:0006355
Vium7849g00001 271 PANTHER NAC TRANSCRIPTION FACTOR 56 9 212 - -
Vium7849g00001 271 Gene3D NAC domain 18 164 IPR036093 GO:0003677|GO:0006355
Vium7849g00001 271 Pfam No apical meristem (NAM) protein 10 133 IPR003441 GO:0003677|GO:0006355
Vium7849g00001 271 ProSiteProfiles NAC domain profile. 9 159 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7849g00001 Vium-Chr7849 5261 6814 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7849g00001 7 271 NAC Transcription Factor Family AT1G01720 68.421 2.02e-136 384
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vium7849g00001 NAM 1.9e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7849g00001 - - pvu:PHAVU_001G072200g 486.108