Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vium7846g00001 | ATGAATAAAGAAGATGATGTGAACCATGGTAACTATGAGCATGACATAGAAATTGAAGGTCTGTTGGATGGGAATGAGGAAAACAGAAGGTACTGGTCAGGGTTATCTGACAGAAGCTTGTCTCATACAAAGCCACTTCTTGTGAAGAGGACCAACACCACTTCACAGATCGCTATAGTTGGTTCCAACCTTAGCCCTATTGAAAGCCTTGACTATGAGATTTTCTATAATGAGATATTGAAGCATGACTGGAGGTCCAGAGAGAAGTTTGAGAAAATCCAATATACGGTGCTTAAGTGGGTATTTGCTCTTCTTATTGGATTAGGAACTGGATTGGTTGGCTTCTTTAACAGTTTTGCAGTTGAGAACATAGCCGGTTTCAAGCTGCTTCTCACCACCACTCTCATGTCTAAAAACAGATATCTTGAGGCATTTTTAGCATATGCTGGTGTGAATGTATGTTTAGCAGCAGCAGCTGCTGCACTTTGTGCTTTCATTGCTCCAGCAGCGGCAGGCTCTGGAATTCCAGAGGTAAAAGCATATCTCAATGGCGTGGATGCTCACTATATATTGGCTCCCAGCACCCTTTTGGTAAAGATATTTGGTTCCATCCTTGGAGTTTCTGCTGGATTTGTGGTGGGAAAAGAGGGACCTATGGTACATACAGGTGCATGCATAGCTTCTTTATTGGGACAGGGTGGATCTCGCAAGTATCACTTGACTTGCAGTTGGCTTAGATTTTTCAAAAACGACCGAGACCGGCGAGACATGATTACTTGTGGTGCAGCTGCTGGTGTTGCTGCTGCCTTTCGTGCACCAGTAGGTGGTGTCCTCTTTGCCCTTGAAGAGGCAGCTTCATGGTGGCGGAGTGCACTTCTTTGGAGGACGTTCTTCACAACTGCAGTAGTTGCTGTTGTTTTAAGAGTTGCAATTCAGTTTTGTGCCACAGGAAAATGTGGGCTATTTGGTGCAGGTGGTTTGATAATGTATGATGTTGGTTCAGCCAATATAACATATAGTGCTAGTGATATACTTGCAGTACTACTTTTGGGAGCCGTTGGTGGAATACTCGGAAGCATATATAATTACCTTGTGGATAAAGTTGTTCGAACATATAGCATCATCAATGAAAAAGGTCCAGCTTTCAAAATCTCTCTTGTTGTGACAGTTGCTCTTTTGACATCATGTTGCTTTTATTTCTTGCCATGGGTTGCACACTGCATTCCCTGTCCTTCTAGTTCAACAATGGCCTGTCCCTCTATAGATGAGTCTGGAGAATATCAAAACTTTCAATGCCCTCCAGGATACTACAATGATCTTGCTTCCCTCTTTCTGAACACCAATGATGATGCTATTCGTAATCTACTCAGCCCCAAGATAAACAAAGAATTTCATATTTCCAGTTTGTTTATCTACTTTGCTACTATTTACTGTCTTGGGATAATCACTTATGGTATTGCCATTCCATCCGGGCTCTTCATTCCTGTGATACTTGCTGGTGCTACCTACGGCCGTCTTGTTAGCCGGATCTTTGAACCGATCACAGGACTTGACAGAGGACTCTTTGCCCTACTTGGAGCAGCTTCCTTCCTTGGTGGCACCATGAGAATGACAGTTTCTATTTGTGTCATATTGCTTGAGCTCACCAATGATCTCTTGTTACTTCCACTTGTGATGTTGGTCTTGTTAGTCTCAAAAACTGTGGCTGACAGCTTCAACAAGGGTGTTTATGATCTAATACTTCAGATCAAAGGACTTCCTTATTTGGAGGCTCATGCAGAACCTTACATGAAGAATTTAGTTGCTCGTGATGTTGTTTCAGGTCCATTGATTACCTTTTCTGGCGTTGAAAAGGTTGGCATTATATGGCATGCTTTGAATGCTACAGGGCATAATGGATTTCCTGTCATTGATGAACCACCTTTCACAGATGCACCAGAATTATGTGGGGTTGTACTGAGGTCTCATTTACTAGTGTTGCTGAAGGAGAAGATTTTCTCAAATTCTAAGGATTTCATAGATCAAAATAGCTTCCAGAGAATTTCTACTTTAGATTTTGGAAAGGCAGGATCAGGAAAGGGTATCCAACTAGAGGATATTGATATTGATGAGGAAGAAATGGATATGTATGTTGATCTCCATCCCATAACCAATGCTTCTCCTTACACTGTGGTTGAGACAATGCCACTTGGCAAAGCTGCTATCATTTTCCGCCAACATGGACTCAGGCACATGTGTGTTGTTCCCAAGAGCCAAGGGAGACCTCCAGTTGTGGGGATTCTGACACGCCATGATTTTATGCCAGAGCATGTTTTGGGACTATACCCTCATATCAAGTCTCACAAACAGCATTTAGGGATATCAATGAAAAAGATTATTTCTTCGGTATTGGAGTGCTGCATTCACTAG | 2409 | 0.4238 | MNKEDDVNHGNYEHDIEIEGLLDGNEENRRYWSGLSDRSLSHTKPLLVKRTNTTSQIAIVGSNLSPIESLDYEIFYNEILKHDWRSREKFEKIQYTVLKWVFALLIGLGTGLVGFFNSFAVENIAGFKLLLTTTLMSKNRYLEAFLAYAGVNVCLAAAAAALCAFIAPAAAGSGIPEVKAYLNGVDAHYILAPSTLLVKIFGSILGVSAGFVVGKEGPMVHTGACIASLLGQGGSRKYHLTCSWLRFFKNDRDRRDMITCGAAAGVAAAFRAPVGGVLFALEEAASWWRSALLWRTFFTTAVVAVVLRVAIQFCATGKCGLFGAGGLIMYDVGSANITYSASDILAVLLLGAVGGILGSIYNYLVDKVVRTYSIINEKGPAFKISLVVTVALLTSCCFYFLPWVAHCIPCPSSSTMACPSIDESGEYQNFQCPPGYYNDLASLFLNTNDDAIRNLLSPKINKEFHISSLFIYFATIYCLGIITYGIAIPSGLFIPVILAGATYGRLVSRIFEPITGLDRGLFALLGAASFLGGTMRMTVSICVILLELTNDLLLLPLVMLVLLVSKTVADSFNKGVYDLILQIKGLPYLEAHAEPYMKNLVARDVVSGPLITFSGVEKVGIIWHALNATGHNGFPVIDEPPFTDAPELCGVVLRSHLLVLLKEKIFSNSKDFIDQNSFQRISTLDFGKAGSGKGIQLEDIDIDEEEMDMYVDLHPITNASPYTVVETMPLGKAAIIFRQHGLRHMCVVPKSQGRPPVVGILTRHDFMPEHVLGLYPHIKSHKQHLGISMKKIISSVLECCIH | 802 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vium7846g00001 | 802 | FunFam | Chloride channel ClC3 | 91 | 405 | - | - | |
Vium7846g00001 | 802 | Pfam | CBS domain | 720 | 766 | IPR000644 | - | |
Vium7846g00001 | 802 | Gene3D | Clc chloride channel | 91 | 589 | - | - | |
Vium7846g00001 | 802 | CDD | CBS_pair_voltage-gated_CLC_euk_bac | 602 | 769 | - | - | |
Vium7846g00001 | 802 | PRINTS | Chloride channel signature | 488 | 508 | IPR001807 | GO:0005247|GO:0006821|GO:0016020|GO:0055085 | |
Vium7846g00001 | 802 | PRINTS | Chloride channel signature | 520 | 536 | IPR001807 | GO:0005247|GO:0006821|GO:0016020|GO:0055085 | |
Vium7846g00001 | 802 | PRINTS | Chloride channel signature | 538 | 557 | IPR001807 | GO:0005247|GO:0006821|GO:0016020|GO:0055085 | |
Vium7846g00001 | 802 | PRINTS | Chloride channel signature | 199 | 218 | IPR001807 | GO:0005247|GO:0006821|GO:0016020|GO:0055085 | |
Vium7846g00001 | 802 | PRINTS | Chloride channel signature | 263 | 282 | IPR001807 | GO:0005247|GO:0006821|GO:0016020|GO:0055085 | |
Vium7846g00001 | 802 | PRINTS | Chloride channel signature | 576 | 590 | IPR001807 | GO:0005247|GO:0006821|GO:0016020|GO:0055085 | |
Vium7846g00001 | 802 | PRINTS | Chloride channel signature | 168 | 185 | IPR001807 | GO:0005247|GO:0006821|GO:0016020|GO:0055085 | |
Vium7846g00001 | 802 | Pfam | Voltage gated chloride channel | 156 | 570 | IPR001807 | GO:0005247|GO:0006821|GO:0016020|GO:0055085 | |
Vium7846g00001 | 802 | Gene3D | - | 590 | 772 | IPR046342 | - | |
Vium7846g00001 | 802 | SMART | cbs_1 | 609 | 662 | IPR000644 | - | |
Vium7846g00001 | 802 | SMART | cbs_1 | 720 | 771 | IPR000644 | - | |
Vium7846g00001 | 802 | ProSiteProfiles | CBS domain profile. | 716 | 780 | IPR000644 | - | |
Vium7846g00001 | 802 | SUPERFAMILY | CBS-domain pair | 593 | 767 | IPR046342 | - | |
Vium7846g00001 | 802 | PRINTS | Plant CLC chloride channel signature | 284 | 292 | IPR002251 | GO:0005247|GO:0006821|GO:0016020 | |
Vium7846g00001 | 802 | PRINTS | Plant CLC chloride channel signature | 298 | 308 | IPR002251 | GO:0005247|GO:0006821|GO:0016020 | |
Vium7846g00001 | 802 | PRINTS | Plant CLC chloride channel signature | 440 | 456 | IPR002251 | GO:0005247|GO:0006821|GO:0016020 | |
Vium7846g00001 | 802 | PRINTS | Plant CLC chloride channel signature | 316 | 323 | IPR002251 | GO:0005247|GO:0006821|GO:0016020 | |
Vium7846g00001 | 802 | PANTHER | CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER | 37 | 773 | - | - | |
Vium7846g00001 | 802 | SUPERFAMILY | Clc chloride channel | 80 | 592 | IPR014743 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vium7846g00001 | Vium-Chr7846 | 13424 | 20457 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vium7846g00001 | 5 | 782 | Ion Channels | AT5G49890 | 71.191 | 0.0 | 1098 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vium7846g00001 | K05016 | - | gmx:100809070 | 1275.77 |