Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7833g00006 ATGGATAGCGAGCCATGGCCTTCTACATCAGACGCTGCAAAAGATCTGATCAGAAAAATGCTTACTTATGACCCTAAGGAACGGATTACAGCTGCTGAGGCCCTTGAACATCCATGGTTGAAAGAAGGTGGTCAAGCATCAGAAAAGCATCCAGACAGTGCTGTTTTAAGTAGGATGGAAAAGTTCAAAGCAATGAACCAGATGAAGAAGCTTGCAATGAAGGTAATAGCAGAAAATCTTTCAGAGGAAGAAACAAAGGGCCCCAGACAAATGTTCAACAATATGGATACTGATGGCAGTGGCACTATCACATTTGAAGAACTCAAATCTGGATTATCCAGATTGGGTTCCCTGCCTAGTGAATCTGAAATAAGGCAGCTATTGAATGCTATTGGTAATGACAAGAATGGAACAATTAACTATTATGAATTCGTTGCTGCCACCATGGATCGACACAGACTGGAGATGGGGGGGAGTTTGTTCAAGGCTTTTCATTACTTTGACAAGGATGACAAGGGTTATATAACGAGAGATGAACTTAGGGAAGCTATCACTGTACACCAAATGGGAGATGAAGCTACGATAGATGGAGTCTTCGAGGATGTAGACTCTGACAAAGATGGGAAAATTAACTATGAGGAATTTATGAGCATGATGAGAAACGAATGCTGA 672 0.4152 MDSEPWPSTSDAAKDLIRKMLTYDPKERITAAEALEHPWLKEGGQASEKHPDSAVLSRMEKFKAMNQMKKLAMKVIAENLSEEETKGPRQMFNNMDTDGSGTITFEELKSGLSRLGSLPSESEIRQLLNAIGNDKNGTINYYEFVAATMDRHRLEMGGSLFKAFHYFDKDDKGYITRDELREAITVHQMGDEATIDGVFEDVDSDKDGKINYEEFMSMMRNEC 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7833g00006 223 Gene3D Transferase(Phosphotransferase) domain 1 1 49 - -
Vium7833g00006 223 FunFam Calmodulin 1 77 222 - -
Vium7833g00006 223 SUPERFAMILY EF-hand 79 219 IPR011992 -
Vium7833g00006 223 ProSitePatterns EF-hand calcium-binding domain. 96 108 IPR018247 -
Vium7833g00006 223 ProSiteProfiles EF-hand calcium-binding domain profile. 119 154 IPR002048 GO:0005509
Vium7833g00006 223 ProSitePatterns EF-hand calcium-binding domain. 203 215 IPR018247 -
Vium7833g00006 223 ProSiteProfiles EF-hand calcium-binding domain profile. 83 118 IPR002048 GO:0005509
Vium7833g00006 223 Gene3D - 50 222 - -
Vium7833g00006 223 ProSiteProfiles EF-hand calcium-binding domain profile. 190 223 IPR002048 GO:0005509
Vium7833g00006 223 SUPERFAMILY Protein kinase-like (PK-like) 4 45 IPR011009 -
Vium7833g00006 223 Pfam EF-hand domain pair 160 220 IPR002048 GO:0005509
Vium7833g00006 223 Pfam EF-hand domain pair 90 148 IPR002048 GO:0005509
Vium7833g00006 223 SMART efh_1 159 187 IPR002048 GO:0005509
Vium7833g00006 223 SMART efh_1 194 222 IPR002048 GO:0005509
Vium7833g00006 223 SMART efh_1 87 115 IPR002048 GO:0005509
Vium7833g00006 223 SMART efh_1 123 151 IPR002048 GO:0005509
Vium7833g00006 223 ProSiteProfiles EF-hand calcium-binding domain profile. 155 189 IPR002048 GO:0005509
Vium7833g00006 223 ProSiteProfiles Protein kinase domain profile. 1 40 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium7833g00006 223 PANTHER SERINE/THREONINE-PROTEIN KINASE 2 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7833g00006 Vium-Chr7833 28992 30953 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7833g00006 1 220 EF-hand Containing Proteins AT1G76040 64.091 9.76e-99 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vium7833g00006 EF-hand_7 1.1e-12 CL0220
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7833g00006 K13412 - gmx:100792610 350.903