Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7833g00004 ATGGGAGTGGGATTCTCAAAGGTGTTAACACACACAACAGACGATGAAATTCCAATTTCTTCGACAGATTCTGCTCCTCAACTCACCTACAAACAACCTAGGAAAAACCTGCCTTTTCCACGTTCTCTTGTTCCTCCTCCCATGCCAACCCAATGTTCTTCACAGACAGGACCTGTTCTTGGGAAGCCTTACGTTAAAATAAAGCACACGTACGAGATGAAGCAAGAGCTGGGAAGAGGCAAGTTTGGCGTGACTTATCTGTGTGTAGAGAAGGCCACAGGAATTTCTTATGCATGCAAATCCATAGCAAAGAAGGGTCCGCAAGAAGTTGAGAATGTTAGAAGAGAAGTTATGATTCTGCAGCATCTTTCAGGGCAACATAACATAGTGGATTTCAAGGGAGCTTACGAGGATAGGGAGAACGTGCATCTGGTGATGGATTTGTGCAGTGGAGGTGAACTCTTTGACCGTATTGTTGCAAAAGGCAGACACTCGGAGCGTGAAGCAGCCTCTGTTATGAGACAGATTGTTAAGGTGGTCGACGTGTGTCATTTCATGGGTGTGATGCATCGAGACCTCAAGCCAGAGAATTTCTTGTTCGCCACCAAGGACGAGGATGCCCCTTTGAAACTCACGGATTTTGGATCCTCTGTCTTCTTTCACATTGGTGAGGTGTATAAAGATATTGTTGGAAATGCATATTACATGGCTCCTGAGGTTTTGAAACGAAATTACGGAAAGGAGATAGATGTTTGGAATGCAGGAGTCATTTTATACATTCTCTTAAGTGGGGTGCCTCCATTTTGGGCTGGTAAGTAA 819 0.4457 MGVGFSKVLTHTTDDEIPISSTDSAPQLTYKQPRKNLPFPRSLVPPPMPTQCSSQTGPVLGKPYVKIKHTYEMKQELGRGKFGVTYLCVEKATGISYACKSIAKKGPQEVENVRREVMILQHLSGQHNIVDFKGAYEDRENVHLVMDLCSGGELFDRIVAKGRHSEREAASVMRQIVKVVDVCHFMGVMHRDLKPENFLFATKDEDAPLKLTDFGSSVFFHIGEVYKDIVGNAYYMAPEVLKRNYGKEIDVWNAGVILYILLSGVPPFWAGK 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7833g00004 272 FunFam Calcium-dependent protein kinase 1 73 153 - -
Vium7833g00004 272 SMART serkin_6 71 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium7833g00004 272 MobiDBLite consensus disorder prediction 16 31 - -
Vium7833g00004 272 PANTHER SERINE/THREONINE-PROTEIN KINASE 67 269 - -
Vium7833g00004 272 MobiDBLite consensus disorder prediction 16 37 - -
Vium7833g00004 272 Gene3D Transferase(Phosphotransferase) domain 1 154 272 - -
Vium7833g00004 272 CDD STKc_CAMK 71 270 - -
Vium7833g00004 272 ProSitePatterns Protein kinases ATP-binding region signature. 77 105 IPR017441 GO:0005524
Vium7833g00004 272 Pfam Protein kinase domain 71 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium7833g00004 272 ProSitePatterns Serine/Threonine protein kinases active-site signature. 188 200 IPR008271 GO:0004672|GO:0006468
Vium7833g00004 272 Gene3D Phosphorylase Kinase; domain 1 73 153 - -
Vium7833g00004 272 ProSiteProfiles Protein kinase domain profile. 71 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium7833g00004 272 SUPERFAMILY Protein kinase-like (PK-like) 69 270 IPR011009 -
Vium7833g00004 272 FunFam Maternal embryonic leucine zipper kinase 61 271 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7833g00004 Vium-Chr7833 20628 21733 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7833g00004 45 270 EF-hand Containing Proteins AT1G50700 66.957 3.52e-109 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vium7833g00004 Pkinase 5.5e-59 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7833g00004 K13412 - gmx:100792610 439.884