Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7833g00001 ATGGGGTTGGGGTTGTTCAAGGCGTTGTTTTGCTGTAGCAAGGTCCGTCAAATTGAAATCGAGGAGTCATGGGAGTCGTCTCCGGAGCATAGGTCGAAAGAAGATAGTGGAAAAAGAAAAGCAGTAGTTGGTGAATTTGGTCTTGAGAAGAAGAGGAGCACGCCACAAACGGGAGCTATTCTGGGAAAACCGTACGTAAAGATAGAGCAAATGTACGAGATGAAGAAAGAGCTGGGAAGCGGGCAGTGGGGTGTGACTTATCTGTGCGTGGAGAAGACGACGCAGAGAGAGTACGCTTGCAAGTCGATTGCGAAGACGAAGCTGGTGAGTGCGCAGGAGATTGAGGACGTGAGAAGAGAGGTTATGATTCTGCAGCATCTGTCCGGGCAACCCAACATCGTGGAGTTCAGAGGGGCTTTCGAAGACAGACACAGCGTGCATCTGGTGATGGAGCTGTGCAGTGGAGGCGAACTCTTCGACCGCATCATTGCCAAAGGGAACTACTCAGAGCGTGAGGCGGCGACGGTGACGAGGCAGATCGTGAACGTCGTTCATGTCTGCCATTTCATGGGCGTCATGCATCGAGACCTCAAGCCGGAAAACTTCTTGTTGGCCACCAACACAGACGATGCTGCCGTCAAAGCCACTGATTTTGGACTCTCCATTTTCATCGAGGAAGTATGA 684 0.5146 MGLGLFKALFCCSKVRQIEIEESWESSPEHRSKEDSGKRKAVVGEFGLEKKRSTPQTGAILGKPYVKIEQMYEMKKELGSGQWGVTYLCVEKTTQREYACKSIAKTKLVSAQEIEDVRREVMILQHLSGQPNIVEFRGAFEDRHSVHLVMELCSGGELFDRIIAKGNYSEREAATVTRQIVNVVHVCHFMGVMHRDLKPENFLLATNTDDAAVKATDFGLSIFIEEV 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7833g00001 227 SUPERFAMILY Protein kinase-like (PK-like) 72 225 IPR011009 -
Vium7833g00001 227 PANTHER SERINE/THREONINE-PROTEIN KINASE 61 223 - -
Vium7833g00001 227 Gene3D Transferase(Phosphotransferase) domain 1 158 227 - -
Vium7833g00001 227 Gene3D Phosphorylase Kinase; domain 1 73 157 - -
Vium7833g00001 227 FunFam Calcium-dependent protein kinase 1 74 157 - -
Vium7833g00001 227 Pfam Protein kinase domain 72 225 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium7833g00001 227 ProSitePatterns Serine/Threonine protein kinases active-site signature. 192 204 IPR008271 GO:0004672|GO:0006468
Vium7833g00001 227 ProSitePatterns Protein kinases ATP-binding region signature. 78 105 IPR017441 GO:0005524
Vium7833g00001 227 ProSiteProfiles Protein kinase domain profile. 72 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium7833g00001 227 SMART serkin_6 72 224 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7833g00001 Vium-Chr7833 11096 11958 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7833g00001 16 226 EF-hand Containing Proteins AT1G50700 58.768 9.39e-84 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vium7833g00001 Pkinase 6.7e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7833g00001 K13412 - vum:124845936 447.588