Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7832g00003 ATGGAAAAGGACTATTTCCGACATGATAGTAATAGAAATGTAGAGAGAGGATTTGTTATGCCTTTGTCCACTTACCTTGCAACAGATGAAGAATGTGTTGTGGATGGACTTTCTCTCAAGACACCTGCAACTGCAGTGAAAAACACAAGAGAGGGACGTGGTTCCAGAATCAGCTCTTGCAGGGTGGTTTCCTCCGCTCCTTCGCCCATGCTGCTGCCGCAAAGTGGCCGGAATCAAAGGAGGTGCTGGTCGCCGGAGTTGCATCACCGTTTTGTTAAGGCATTAGAGGAGCTTGGAGGCTCTCAAGCAGCTACACCAAAGCAAATTAGGGAACTCATGAGGGTTGATGGCCTGACCAACGACGAAGTAAAGAGTCATTTACAAAAATACAGACTTCATACAAGGAGAGTTCCAGCTGCTACAGCTGCAAATTGTAGTATCTCTGGTGCAGATCTTGGAGGCTTGTGGATGCACAAAGAATCATTGAAGGGTACAAGTTCTTGTTCTCCTCAAGGGCCTCTCCAATTCGCTACAAAATCTGGGGAAACGACATCCACAACAGAAGATAAAATTAGAGGAGTTTCACATCTACTCAAGAACAACACATGA 609 0.4565 MEKDYFRHDSNRNVERGFVMPLSTYLATDEECVVDGLSLKTPATAVKNTREGRGSRISSCRVVSSAPSPMLLPQSGRNQRRCWSPELHHRFVKALEELGGSQAATPKQIRELMRVDGLTNDEVKSHLQKYRLHTRRVPAATAANCSISGADLGGLWMHKESLKGTSSCSPQGPLQFATKSGETTSTTEDKIRGVSHLLKNNT 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7832g00003 202 Pfam Myb-like DNA-binding domain 80 131 IPR001005 -
Vium7832g00003 202 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 79 135 IPR017930 -
Vium7832g00003 202 FunFam Myb family transcription factor 77 135 - -
Vium7832g00003 202 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 16 188 IPR044787 GO:0003700|GO:0006355
Vium7832g00003 202 SUPERFAMILY Homeodomain-like 77 136 IPR009057 -
Vium7832g00003 202 Gene3D - 78 135 - -
Vium7832g00003 202 NCBIfam myb-like DNA-binding domain, SHAQKYF class 78 133 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7832g00003 Vium-Chr7832 20686 22130 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7832g00003 74 160 G2-like Transcription Factor Family AT2G03500 66.667 1.17e-33 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vium7832g00003 Myb_DNA-binding 1.7e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7832g00003 - - vum:124845933 382.874