Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7832g00002 ATGGAAAAGGACTATTTCCGACATGATAGTAATAGAAATGTAGAGAGAGGATTTGTTATGCCTTTGTCCACTTACCTTGCAACAGATGAAGAATGTGTTGTGGATGGACTTTCTCTCAAGACACCTGCAACTGCAGTGAAAAACACAAGAGAGGGACGTGGTTCCAGAATCAGCTCTTGCAGGGTGGTTTCCTCCGCTCCTTCGCCCATGCTGCTGCCGCAAAGTGGCCGGAATCAAAGGAGGTGCTGGTCGCCGGAGTTGCATCACCGTTTTGTTAAGGCATTAGAGGAGCTTGGAGGCTCTCAAGCTACACCAAAGCAAATTAGGGAACTCATGAGGGTTGATGGCCTGACCAACGACGAAGTAAAGAGTCATTTACAAAAATACAGACTTCATACAAGGAGAGTTCCAGCTGCTACAGCTGCAAATTGTAGTATCTCTGGTGCAGATCTTGGAGGCTTGTGGATGCACAAAGAATCATTGAAGGGTACAAGTTCTTGTTCTCCTCAAGGGCCTCTCCAATTCGCTACAAAATCTGGGGAAACGACATCCACAACAGAAGGTGACAACATGATAGATGATGATATAAAATTAGAGGAGTTTCACATCTACTCAAGAACAACACATGATTACATAAAAGAGGATGGATCTTCGGAGAGAGGCTTTTGA 669 0.4484 MEKDYFRHDSNRNVERGFVMPLSTYLATDEECVVDGLSLKTPATAVKNTREGRGSRISSCRVVSSAPSPMLLPQSGRNQRRCWSPELHHRFVKALEELGGSQATPKQIRELMRVDGLTNDEVKSHLQKYRLHTRRVPAATAANCSISGADLGGLWMHKESLKGTSSCSPQGPLQFATKSGETTSTTEGDNMIDDDIKLEEFHIYSRTTHDYIKEDGSSERGF 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7832g00002 222 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 16 189 IPR044787 GO:0003700|GO:0006355
Vium7832g00002 222 MobiDBLite consensus disorder prediction 163 190 - -
Vium7832g00002 222 SUPERFAMILY Homeodomain-like 77 135 IPR009057 -
Vium7832g00002 222 NCBIfam myb-like DNA-binding domain, SHAQKYF class 78 132 IPR006447 GO:0003677
Vium7832g00002 222 Gene3D - 76 136 - -
Vium7832g00002 222 Pfam Myb-like DNA-binding domain 80 130 IPR001005 -
Vium7832g00002 222 FunFam Two-component response regulator 74 137 - -
Vium7832g00002 222 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 79 134 IPR017930 -
Vium7832g00002 222 MobiDBLite consensus disorder prediction 163 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7832g00002 Vium-Chr7832 20686 22130 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7832g00002 74 159 G2-like Transcription Factor Family AT2G03500 66.667 8.27e-32 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vium7832g00002 Myb_DNA-binding 1.6e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7832g00002 - - vum:124845933 439.499