LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium782g00003	ATGGCAGACACAAATTCAGTTGAAGTGATTTTGGATTTTCTGAGGAGGAATAGGTTCACCCGAGCTGAGGCGGCTTTGCGTAGTGAGCTCAGTAACTGTTCTGATGTGAATGGTTTCTTGCAAAAGCTTACATTGGAAGAAAAGGACTTGCGTGGCGGGTTGCACAATGATAAGGGGAAGCCTGTTATAGAAAATCATGGGTTGGATTCTCGTGACGGTGTTGAAGTTTCTAAAGAACTGATTGTGAAGGAAATAGAATGTGGGACTGGTAGAAATGCTGCTGAAGAAAGCAAGTGGAAAACTGTTGCTCCCACAGGGGAAAGGAATAAGTCTGGTGAAGTGGTTGGAACGAGTGAAAAAAACTTTACCTTCTCAAAGAGTTCGGAGGATAGTGTGCTTGATTTGTACTCATGGAAGTTTAATCCCAGCAATGGTCCTGTTGAACCTTACCAAAACGATAGTGGGAGTAGGCCTAGTAATGCTTTGAAGGCCCCGATATCTCAGCAATCAAAGTATCAAACTGGTGAAGTTCCTGCTGCAACCAACAGTAATGTGAAATCTGGGGAGGGCGAGGGAAATAATTTACCTGCAGAAAAAACAACCTTGTGGCTTGGAAGTAGTGGTAAAGCCTCTACGGAACCAAAGTATGACCTTATGCATAACAAAGAGCCTAAGGAACTTGATCTACAGCTCAAATTTAATGCTTCATCTCTTAAAGAGAGCTTGACAGATAATCATTTGTCAAGAACTGATGAGAATACGAACTCATCTACAGATCTATGGAAAGATTGTTCTGTGAAGACCGTTTTCCCTTTCTCAAAAGGTGATATGTCTACAAGCTACAACGGTCCAACTTATTCTGACAGACAAGAGGATAAGAGAAGGGCAGAAAACGGTGATGTTATGACATCAATAAAAGAGCAAGTGGATGAAGTAGGAAGAGCTCTTTACTTAGGAAAGTTGCAAGGCAGTTCTGGCAGCTTAAATTTTCCTCTTGAACTGGAGAATCCAAAAGAAGAGTTTCCTAGGCTTCCTCCTGTAAAAATCAAGTCAGAAGATAAGCCCTTGACTTTTAACTGGGGAGATAAGTTTGAGTCTGACGGCCTGGCTGCGAAACTTACTGGTGCCGACAACTCCTTTCTTATAGGGTCATATTTGGATGTCCCTATTGGACAGGACATTAAAACTACTGGTGTGAGGAAGTCTATAGGGGGCAGCTGGCTGTCTGTAAGTCAAGGGATTTCTGAGGATACATCTGATCTTGTATCAGGTTTTGCAACAATTGGGGATGGGTTGAGTGAATCTGTTGATTATCCAAATGAATATTGGGACTCTGATGAATATGATGATGATGAAGATGTTGGGTACATGAGACAACCCATTGAGGATGAGACCTGGTTTTTGGCACATGAAATTGATTACCCCAGTGATAATGAAAAGGGGACGGGGCATGGAAGTGTTCCAGATCCTCAGGAAAGAGGTCCAGCCAAAGATGAAGAGGATGATCAATCTTTTGCTGAGGAGGATTCTTATTTCTCTGGTGAACAATATATTCTACCAAAAAATGTCGAGCCAGTCACTTCAGATGATCCTATTGGTCTAACAATTACTGAAATGTATGGAAGAACCAATGGTAACGATGTAATGACTCAATATGATACACAACTGGTGGACGTTGAAGAACTGAATCTGATGCATATAGAACCTGTCAGGCAGGGCTTTGTCACTCACCAAAATGATCTCATCATGCTGGGAGATGGGCGGGTTCTGAATCACGGTGCGAGGCCACGAATTGAGGACATGGAAGATGATCAGCATGGTTCAGTTAGATCAATTGGAGTGGGGATCAACAGTGATGCTGCTGATATTGGTAGTGAAGTGCATGGAAGTTTGATTGGTGGTAGTAGTGAGGGGGATTTAGAATATTTTCATGATCATGATACTATGCACAGTGGCACCAAACACACTCATCAGGGTTTGGACAAGAGTTCTTGTAACAAATCAGTTAAAAATAACAAGAAAACTGACAAGAATGAATCAAATAAATATGTCATAGACAGTGATAAAGATGCATGCTCGCAGATAAAAACACATGCTGATGGGAACTTTTCATTTCCCCAATCTCTTAGAGATGGCCAGATGATTCAAGCTGGCTCCAGTAAGCCCCTATGGACGAGTAATGGTAATGAAGATGAAACCGATGACTGTCTTAATGCCTTTGCGGGCTCTGATGACATGCTTTCATCTTGGAGGCGGAAGAGTAGTGATTCTTCGCCTGTTAAAAGTTCTAGGGATGATAATAATGCTATCGTGGTAAGATCAAGAAACTCTTCTCCAACTACAGTCTCAAATTATGGGTATACTGATGGAGAGCATGCCAAGCTAGAAAAAGATGAAAAGGTAAGTGTTGTAAGGGAAGATGATATAGGTGCATCACTAGAGGATGAAGAGGCAGCTGCTGTGCAAGAGCAGGTAAGGCAAATAAAGGCTCAAGAGGAAGAATTTGAAACCTTCAATCTAAAGATCGTGCACAGGAAAAACAGAACTGGCTTTGAGGAGGACAAGAATTTCCATGTTGTTTTGAATTCCGTGATAGCTGGGCGCTATCATGTCACCGAGTATCTTGGATCTGCTGCATTTAGCAAAGCTATACAAGCTCATGACCTGCACACAGGCATGGATGTTTGTGTTAAGATTATAAAAAACAACAAAGACTTCTTTGACCAAAGCCTTGATGAGATCAAGCTTCTTAAGTATGTCAATAAGCATGATCCTTCAGACAAGTTCCACCTTCTAAGATTGTATGATTATTTCTATTATAGAGAACATTTGTTAATAGTATGTGAGTTGCTCAAAGCCAACCTATATGAGTTTCACAAATTTAATCGAGAATCAGGGGGGGAAGTTTATTTCACGATGCCAAGGTTGCAGTCAATCACCATTCAGTGTTTGGAGGCACTTCAGTTTTTGCATAGTCTTGGACTAATACATTGTGACTTGAAGCCAGAGAATATTTTGGTTAAAAGCTATAGCAGATGTGAAGTGAAGGTTATTGATCTCGGAAGTAGTTGTTTTGAGACAGATCATCTTTGCTCGTATGTTCAGTCCAGGTCTTATCGTGCTCCTGAGGTTATTCTGGGGCTTCCATATGACAAGAAGATTGATATCTGGTCACTTGGATGCATCTTGGCAGAACTTTGTACTGGCAACGTCCTCTTCCAAAATGATTCCCCTGCTACATTACTTGCTCGGGTGATCGGGATCATTGGCCCAGTTGATCAAAGTTTACTTGCCAAAGGACGGGATACATATAAATACTTCACAAAAAATCACATGCTTTATGAACGGAATCAGGAAAGCAACAGGTTAGAATACCTGATTCCAAAAAAGACATCATTGAGGCATAGATTACCGATGGGAGACCAAGGCTTCATCGACTTTGTTGCTCATCTGCTCGAGGTTAACCCAAAAAAGCGACCTTCTGCGTCCGAGGCCCTGAAGCACCCATGGTTATCATACCCTTATGAACCAATATCATCTTAA	3543	0.416	MADTNSVEVILDFLRRNRFTRAEAALRSELSNCSDVNGFLQKLTLEEKDLRGGLHNDKGKPVIENHGLDSRDGVEVSKELIVKEIECGTGRNAAEESKWKTVAPTGERNKSGEVVGTSEKNFTFSKSSEDSVLDLYSWKFNPSNGPVEPYQNDSGSRPSNALKAPISQQSKYQTGEVPAATNSNVKSGEGEGNNLPAEKTTLWLGSSGKASTEPKYDLMHNKEPKELDLQLKFNASSLKESLTDNHLSRTDENTNSSTDLWKDCSVKTVFPFSKGDMSTSYNGPTYSDRQEDKRRAENGDVMTSIKEQVDEVGRALYLGKLQGSSGSLNFPLELENPKEEFPRLPPVKIKSEDKPLTFNWGDKFESDGLAAKLTGADNSFLIGSYLDVPIGQDIKTTGVRKSIGGSWLSVSQGISEDTSDLVSGFATIGDGLSESVDYPNEYWDSDEYDDDEDVGYMRQPIEDETWFLAHEIDYPSDNEKGTGHGSVPDPQERGPAKDEEDDQSFAEEDSYFSGEQYILPKNVEPVTSDDPIGLTITEMYGRTNGNDVMTQYDTQLVDVEELNLMHIEPVRQGFVTHQNDLIMLGDGRVLNHGARPRIEDMEDDQHGSVRSIGVGINSDAADIGSEVHGSLIGGSSEGDLEYFHDHDTMHSGTKHTHQGLDKSSCNKSVKNNKKTDKNESNKYVIDSDKDACSQIKTHADGNFSFPQSLRDGQMIQAGSSKPLWTSNGNEDETDDCLNAFAGSDDMLSSWRRKSSDSSPVKSSRDDNNAIVVRSRNSSPTTVSNYGYTDGEHAKLEKDEKVSVVREDDIGASLEDEEAAAVQEQVRQIKAQEEEFETFNLKIVHRKNRTGFEEDKNFHVVLNSVIAGRYHVTEYLGSAAFSKAIQAHDLHTGMDVCVKIIKNNKDFFDQSLDEIKLLKYVNKHDPSDKFHLLRLYDYFYYREHLLIVCELLKANLYEFHKFNRESGGEVYFTMPRLQSITIQCLEALQFLHSLGLIHCDLKPENILVKSYSRCEVKVIDLGSSCFETDHLCSYVQSRSYRAPEVILGLPYDKKIDIWSLGCILAELCTGNVLFQNDSPATLLARVIGIIGPVDQSLLAKGRDTYKYFTKNHMLYERNQESNRLEYLIPKKTSLRHRLPMGDQGFIDFVAHLLEVNPKKRPSASEALKHPWLSYPYEPISS	1180

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium782g00003	1180	FunFam	Putative serine/threonine-protein kinase dyrk2	863	950	-	-
	Vium782g00003	1180	MobiDBLite	consensus disorder prediction	649	682	-	-
	Vium782g00003	1180	Pfam	Protein kinase domain	869	1171	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vium782g00003	1180	Coils	Coil	821	841	-	-
	Vium782g00003	1180	MobiDBLite	consensus disorder prediction	474	507	-	-
	Vium782g00003	1180	MobiDBLite	consensus disorder prediction	752	787	-	-
	Vium782g00003	1180	MobiDBLite	consensus disorder prediction	749	789	-	-
	Vium782g00003	1180	Gene3D	Transferase(Phosphotransferase) domain 1	923	1171	-	-
	Vium782g00003	1180	CDD	PKc_DYRK_like	869	1171	-	-
	Vium782g00003	1180	MobiDBLite	consensus disorder prediction	143	210	-	-
	Vium782g00003	1180	SUPERFAMILY	Protein kinase-like (PK-like)	858	1173	IPR011009	-
	Vium782g00003	1180	MobiDBLite	consensus disorder prediction	143	190	-	-
	Vium782g00003	1180	PANTHER	DUAL SPECIFICITY PROTEIN KINASE	411	1171	-	-
	Vium782g00003	1180	SMART	serkin_6	869	1171	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vium782g00003	1180	FunFam	Serine/threonine-protein kinase ppk15	948	1172	-	-
	Vium782g00003	1180	Gene3D	Phosphorylase Kinase; domain 1	863	950	-	-
	Vium782g00003	1180	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	995	1007	IPR008271	GO:0004672\|GO:0006468
	Vium782g00003	1180	ProSiteProfiles	Protein kinase domain profile.	869	1171	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium782g00003	Vium-Chr782	2207	9833	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium782g00003	868	1166	MAP Kinase Gene Family	AT5G19010	31.034	2.36e-29	122

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_DYRK-PRP4	Vium782g00003		Pkinase	1.1e-50	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium782g00003	-		-	gmx:100786225	2120.89