Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7829g00003 ATGCTCATCGAAATTCATAGCAGGCTGCTGCAGCCAAAGGTATGGAGATTTGTGTGTTTTGTTTCATCGATTGTTGGACTTGTCTGTTATGCTTTGAGCTCTTCTTTCAATTATTTATGTGGCGTTTGGAGGTGGTGGAAGATCTTTTTGTATATTGGTTTTAGTTTCTTCATCTCCCTTTCCACCTTGTTTGCAAAGGCATGGGAGTGCTCCAACTCTCGCTGTTTGGAGGCTCACACAGCCTTCTTGGTTTTGCTGATAACTTCTGTGTACTCCTTTTTCTTCGATAAAAAAGTCACAGAGAAACCAGATGCATATAGTCTGGTTTCGTATGCTGCATTTGCTATCATGTCACTAGGCTTGTCAAGACTAAGTCACTTTGGATTTGAGGTCGATCTTCTATATTTTTTCAGTGGATTTCTGACAGTACAACTCATGCAAATAAAATTATGGTTAGTAATTGTGGGAGGGAGTTTCAGTTATTCCCTCATCATTCTGCGTTCGGCGTTGGATGCTTCAGCCAGAACTGGTTATGTTGGACTCCATGTCAATGATGACGTAGTCATTGAAATTGGTTCACACTCTCAAGGAACAAGCCGCAATTTTTCACAAGTTGGTTCTATTCCCACTGTTGGTAATTCCCTCTTCATGCCGCAAGACGTTGTTGTCTCTGAAGGAGATGAGGATTCAGGATTCACTCAAGGCAAAAATGACAGTAACAAAAGTATCATGGCACGATTCATGGAATGTATAGAGGTGCTTAAGAAGGAAAATGAGACCCTTATCGACACAATTTCCAAGCATGTAGATGGATACCTTAAAGCTAATGTGGTCAACAAGATTCCAACGGTGGAACTCCATGCTGACAACAACTTGTTGGTTGATAAATTGCCTGCTGGAATCATCAACGACCTTCACGAAGCCGTGTGGCTGATAGTGGCTGAAGGGTTTGAGGAGGATTGTTGCAGAGCATACTATACTTGCCGAAGGGAGTTTCTGAAAAAGTGTTTATGTACATTTTGGTTGCAAATGCAAGAGCTTTGCATGGAGGACATTGATAAGATGGACAAGATTCAGAGTTGGTTAACAAAGGTTTTGTTAGTAGTTGATAGTGTACTCCTTCCCAATGAAAGGACACTCTGTGATCGCGTCTTTAAAGGAGTCTCTTCCGCTGGGGATTATGCTTTCACTGTGGTTTGTAGAGAATTGAATATTTGTTTGGTTCGCATTGCCAATCACTTGGCAACTATTCTGGAGTGTGAAAATTTTACATATTATGAGGGTGGTGAGCTTCATCCTAATATCTGTGAATTGATGTACAAAATTCGTTATGTTTGCATACAGAGGGATAATAAATCTAGGCAAGTATTAGAAGAATACACCATGTCTGATAAGGAGGGAAAGCTTTCACCGTCTGGGAATGTGGCCAGGGTAATAGCAACAGCCCTGATAGAGAGAATTTTGGAAGTGGAGTCCAAAAATTACCATAACCCTTCTCTGGGTTATGTTTTCATCATCAACAATCTGAGTTTCATAGAACTAGAAGCAGAATCCTATGGATTAGTTCCTATTTTTAGTCATGATTGGCTCCGGAAAATCAAAACAAAATTCCAGCAAAACCTCGAACTCTATCTGACAAGCTCGTGGAATAAGATCGTGGACTTTCTGAATTTTGATATCAGTGAATCAGAGACTAGTGTTGCGGTTGGGTTACTGAAAGACAGGATAACTTCGTTCAACGAACACTTTGATGAGATATGTAATGTCAGTCTACTTGGTTTGTTTTTGATGAAGAGTTAA 1800 0.4033 MLIEIHSRLLQPKVWRFVCFVSSIVGLVCYALSSSFNYLCGVWRWWKIFLYIGFSFFISLSTLFAKAWECSNSRCLEAHTAFLVLLITSVYSFFFDKKVTEKPDAYSLVSYAAFAIMSLGLSRLSHFGFEVDLLYFFSGFLTVQLMQIKLWLVIVGGSFSYSLIILRSALDASARTGYVGLHVNDDVVIEIGSHSQGTSRNFSQVGSIPTVGNSLFMPQDVVVSEGDEDSGFTQGKNDSNKSIMARFMECIEVLKKENETLIDTISKHVDGYLKANVVNKIPTVELHADNNLLVDKLPAGIINDLHEAVWLIVAEGFEEDCCRAYYTCRREFLKKCLCTFWLQMQELCMEDIDKMDKIQSWLTKVLLVVDSVLLPNERTLCDRVFKGVSSAGDYAFTVVCRELNICLVRIANHLATILECENFTYYEGGELHPNICELMYKIRYVCIQRDNKSRQVLEEYTMSDKEGKLSPSGNVARVIATALIERILEVESKNYHNPSLGYVFIINNLSFIELEAESYGLVPIFSHDWLRKIKTKFQQNLELYLTSSWNKIVDFLNFDISESETSVAVGLLKDRITSFNEHFDEICNVSLLGLFLMKS 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7829g00003 599 SUPERFAMILY Cullin repeat-like 256 589 IPR016159 -
Vium7829g00003 599 Gene3D Exocyst complex component Exo70 232 419 - -
Vium7829g00003 599 Gene3D Exocyst complex component Exo70 420 590 - -
Vium7829g00003 599 PANTHER EXOCYST COMPLEX PROTEIN EXO70 427 589 IPR004140 GO:0000145|GO:0006887
Vium7829g00003 599 Pfam Exo70 exocyst complex subunit 462 589 IPR046364 GO:0000145|GO:0005546|GO:0006887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7829g00003 Vium-Chr7829 28946 31061 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7829g00003 280 589 EXO70 exocyst subunit family AT5G58430 30.971 2.76e-40 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7829g00003 - - vum:124845921 1205.66