Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7829g00001 ATGGCTAGTTCACAACCTCATCCTGTCATTGATATGGTCTGGCCTTCAAGAGGAACAAGGCATAGTGCTTCTCTAGTAATTTCACCTCAAGAGGGTGGTTCTGGTGGTGGCCCTCCCGAAAACATTTATGGTACCGAGGAATGCTTCATGGGTTGTATAGAGGCTCTTAAGAAGGAGAATAGGAGAGTTATAAGAGCAATTTCCATGCATGTAAACAAATACCTTAAAGCCAGTGTTCTTAGTAAGAAGCAGATTTCAGTGCCAGAATTGCATGGCGACGACAACATGGTGGTGGATTCATTGTCGTCAGGAATGATCGGCAAGCTTCGTGAAAGTGTACAAAAGATGGTGTCAGACGGATTTGTGAAGGAATGCTTGCACGTGTACAGTAATTGGCGGAGGGAGTTTTTGAAAGAGAGTCTCCGGGAATTAGGGTTGCAAGATCAAGAGCTCAACAGGGAGGACATTAACAAGTCGGAGAAGATTGAGAGGTTGATAAAAGCTATGAAAATAACTGCGAGGATACTCTTTCCCAATGAAAAAAGACTCTTCATTCGTGTCTTTAGCGGCTCCATTCGCAATGGGGAGTTTCATTTCAGGGAACTTTGCACGGAATTGGTTACTGGTCTGCTGAACTCATCCCTTGCCTTGGCAACTTGGAGCCATTTCATGCGCAACACATTGCAGGAGTTGATACAAGATTTTTTATCATTTACATCAGGTAGAAATATTGTCGTGCCCCTGATAAGGCGGAGATTGTGCATTTATGAGGCTTTGGAAGATCTATCACTCATTCCCGGTGGCGGAATTCATCCTATTACCCACGCAGTGATGTACTATATTTATTCTATCAACAGAAATAGGGAAATTAGTAAACTTAACCAAGATTTGAAAGAGGGAAAGATTCCATCATCTGTGCACATGGCTAGGGTGAGAATTCTGTTAGAGAGTAAGTCCAAATATGGTAATAAGCTTACACTGATGTACTACATTAAATCTCTAAATCGGGAGAGTAAATTTGGACAAGGTTTAGAAGATGAAATGCTTTCACCTGTTTACCTGGACAGGATGACAGAGCTTTTAGAGAGCTGTTTGGTAGCCAACTCAAAAAATTTCAAAAACCCTTCTTTGGGTCATGTTTTCATCATGAATAATCGGAGATTCATAGAAGTAGAGACAAAACTACATGGACTGGGACCTTTTTTTGGAGATGACTGGCTCCACAAAAACACAACAAAGATCCAAGAAAACCGTGAGTTCTATCTTAGAAGCTCATGGAATAAGATTGTGGACCTTTTGAAGGTAGACATCAATCAACTAGAGACTAGTGTTGTAGCCGAGGTGATGAAAGACAACCTTTATTGGTTCAACGAACTCTTTGATGAGGCATGCAACATTCAGTCTGCATGGTCTGTCAGTGATGAGGAGCTAAGGGAACAAATAATAGAATCCATAGAAAACATGCTGTTGCCAGCATATGGAAGTTTCCTTGGTACATTTGAGGAATTTGTTGGGAAGCATGCTTATATATACATTAAGTACGGAATGTTTGAGGTTCAAGATCGACTCAGCAAATTGTTTCTTTTAAGGGAGTAG 1596 0.411 MASSQPHPVIDMVWPSRGTRHSASLVISPQEGGSGGGPPENIYGTEECFMGCIEALKKENRRVIRAISMHVNKYLKASVLSKKQISVPELHGDDNMVVDSLSSGMIGKLRESVQKMVSDGFVKECLHVYSNWRREFLKESLRELGLQDQELNREDINKSEKIERLIKAMKITARILFPNEKRLFIRVFSGSIRNGEFHFRELCTELVTGLLNSSLALATWSHFMRNTLQELIQDFLSFTSGRNIVVPLIRRRLCIYEALEDLSLIPGGGIHPITHAVMYYIYSINRNREISKLNQDLKEGKIPSSVHMARVRILLESKSKYGNKLTLMYYIKSLNRESKFGQGLEDEMLSPVYLDRMTELLESCLVANSKNFKNPSLGHVFIMNNRRFIEVETKLHGLGPFFGDDWLHKNTTKIQENREFYLRSSWNKIVDLLKVDINQLETSVVAEVMKDNLYWFNELFDEACNIQSAWSVSDEELREQIIESIENMLLPAYGSFLGTFEEFVGKHAYIYIKYGMFEVQDRLSKLFLLRE 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7829g00001 531 Pfam Exo70 exocyst complex subunit 164 524 IPR046364 GO:0000145|GO:0005546|GO:0006887
Vium7829g00001 531 Coils Coil 134 154 - -
Vium7829g00001 531 PANTHER EXOCYST COMPLEX PROTEIN EXO70 46 527 IPR004140 GO:0000145|GO:0006887
Vium7829g00001 531 SUPERFAMILY Cullin repeat-like 79 527 IPR016159 -
Vium7829g00001 531 Gene3D Exocyst complex component Exo70 44 530 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7829g00001 Vium-Chr7829 23067 24746 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7829g00001 84 527 EXO70 exocyst subunit family AT5G58430 35.282 1.85e-71 238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7829g00001 - K07195 vum:124845926 1055.43