Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7826g00004 ATGCTGCTTCAGAAGAATGGTTTGCGTAAGAAGAATCCTTCAATTTCTGTTGTTGCTACTCTGTTTGGAGATGGGGAAGATGTTGCATGGCTAGAGAAGAATAATTTTGCTGACTGGGCAGAAGAAAAATCTTATAGAATTTTAGGAAGTGACAACTTTGATGATTCTCAAGGGAGAGCAATTGCACTGGGTTTGAATAAAAAGAGGCCTGTGTTAGTTATCCAAGGCCCTCCCGGTACAGGCAAGACTGGTTTGCTCAAGCATCTTATAGCATGTGCTGTTCAGCAAGGTGAACGGGTTCTTGTTACAGCACCTACTAATGCAGCTGTAGATAACATGGTTGAAAAACTTTCTAATGTCAGATTAAATGTTGTGCGGGTTGGAAATCCAGCCCGGATATCAAAAACAGTGGCATCGAAGTCTTTGGAAGAAATTGTAAATGCTAAGCTTGCAAGTTTTCGAGAAGAATATGAGAGAAAGAAGTCAGATTTAAGAAAAGATCTAAGACATTGTTTAAGGGATGATTCACTAGCTGCGGGCATACGGCAACTTCTGAAGCAGCTGGGAAGGTCACTGAAGAAAAAGGAAAAGCAGATAGTAAATGAAGTTCTATCCAGTGCTCAGGTTGTGCTTGCCACTAATACTGGAGCAGCTGACCCTTTGATTCGAAGACTAGATACTTTTGACTTGGTCGTCATAGATGAAGCTGGACAGGCAATTGAACCCTCTTGCTGGATTCCTATATTGCAAGGTAAGCGGTGTATTCTTGCTGGTGATCAATGCCAACTTGCTCCTGTCATACTATCTAGAAAGGCCTTGGAAGGTGGTCTAAGAATATCTCTATTGGAAAGAGCTGCAACTTTACATGAAGGGATTCTCACCACTAGGTTAACTACACAATACCGAATGAATGATGCTATTTCTAGTTGGGCTTCGAAGGAGATGTACGGAGGATTGTTGAAGTCCTCTGAAACTGTATCTTCTCATCTTCTTGTAGACTCTCCTTTCGTCAAGGTAGTATGCCCATCAATGATATCTCCATCTTCATTGAAGTGA 1056 0.4157 MLLQKNGLRKKNPSISVVATLFGDGEDVAWLEKNNFADWAEEKSYRILGSDNFDDSQGRAIALGLNKKRPVLVIQGPPGTGKTGLLKHLIACAVQQGERVLVTAPTNAAVDNMVEKLSNVRLNVVRVGNPARISKTVASKSLEEIVNAKLASFREEYERKKSDLRKDLRHCLRDDSLAAGIRQLLKQLGRSLKKKEKQIVNEVLSSAQVVLATNTGAADPLIRRLDTFDLVVIDEAGQAIEPSCWIPILQGKRCILAGDQCQLAPVILSRKALEGGLRISLLERAATLHEGILTTRLTTQYRMNDAISSWASKEMYGGLLKSSETVSSHLLVDSPFVKVVCPSMISPSSLK 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7826g00004 351 SMART AAA_5 68 283 IPR003593 GO:0016887
Vium7826g00004 351 Pfam AAA domain 53 269 IPR041677 GO:0004386
Vium7826g00004 351 SMART ultradead3 49 301 IPR014001 -
Vium7826g00004 351 PANTHER DNA2/NAM7 HELICASE FAMILY MEMBER 10 342 - -
Vium7826g00004 351 Gene3D - 3 300 IPR027417 -
Vium7826g00004 351 CDD DEXXQc_SMUBP2 52 302 - -
Vium7826g00004 351 Pfam AAA domain 279 332 IPR041679 -
Vium7826g00004 351 Coils Coil 154 174 - -
Vium7826g00004 351 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 52 343 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7826g00004 Vium-Chr7826 30116 31171 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7826g00004 44 242 Core DNA Replication Machinery Family AT1G08840 27.094 5.07e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7826g00004 - - vum:124845912 681.404