Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7826g00003 ATGGAAATTGCGCTCACTTGCTTCTTCTGTGGCAGAGTCCCACCAACGCTCAAATTGGGGCCTGCTGCAACTGCAACTCCAACTCACCACTTCCCTTGTAACAATGCCTCCACCCACCTGCTTTCTTCCTTCCCCCCTTCGTTTCGACTCTATCGCCTAATTCCGAACGCTACTAACAGCACCCAACCCAAGGTTTCCACCAACTCTAAAACCAGAAGAAGGAGAAGAAGAAGTTGCGAGACTCAGGTGGTGGTGGAGGAGGCTGCTGCTGTCCATCACAACGGAGACCCAATTGGGAAGAAGGATCTCGGGAAGAGTGTTATGAGATGGATTCGCGACAGCATGAGGGCCATGTCGTCTGATTTAGCTGCGGCGGAGATGCTGGGAGAGATGGAGTTGTGGGAGCGCATGGGACCGGGTCTCCCTTTTATTATGCAGGCACAGCCCTATCTCAATGCGGTTCCTATGCCCATTGGCCTTGAAGGTGTTTGCTTGAAGGCCTGCACGCACTACCCCACTCTGTTCGACCATTTTCAGAGGGAGCTTCGCGCTGTTCTCCAAGACCTGCAGAACGACAACTCCATTCAGGACTGGCGGGACACCAAGTCTTGGAAACTGCTTAAGCAGCTCGCCAATTCAGCTCAGCATAGAGCAGTTGTGAGAAAGATAGAACAACCCAAGAGTGTCCAAGGCGTTTTAGGAATGGACTTGGAAAAGGTCAAAGCAATACAGCACAGGATTGATGAATTCACCAATCGCATGTCAGAACTACTCAGTGTCGAAAGGGATGCTGAATTGGAGTTTACTCAGGAGGAATTGGATGCCGTTCCTAAACCAGATGATGTTTCTGATTCTTCAAAACCTCTTGATTTCTTGGTTAGTCATAGCCAGCCTCAACAAGAACACTGCGATACCATTTGTAATTTAACTGCCATCAGTACCTCTACAGGACTGGGGGGAATGCATCTGGTTTTATTCAAGGTTGAAGGGAACCACCGGTTACCACCTACTGCTCTTTCACCCGGAGACATGGTTTGTGTAAGAACATACGACAGCAGGGGTGCAATTACAACTTCTTGCATACAAGGATTTGTGAACAGTTTTGGAGATGATGGCTATAGTATTACAGTTGCTTTAGAGTCACGCCATGGTGACCCTACGTTCTCTAAACTATTTGGGAAGAATGTGCGCATTGACCGTATTCAAGGACTGGCTGATACACTTACCTACGAGCGGAACTGTGAAGCTCTAATGCTGCTTCAGAAGAATGGTTTGCGTAAGAAGAATCCTTCAATTTCTGTTGTTGCTACTCTGTTTGGAGATGGGGAAGATGTTGCATGGCTAGAGAAGAATAATTTTGCTGACTGGGCAGAAGAAAAATCTTATAGAATTTTAGGAAGTGACAGCTTTGATGATTCTCAAGGGAGAGCAATTGCACTGGGTTTGAATAAAAAGAGGCCTGTGTTAGTTATCCAAGGCCCTCCCGGTACAGGCAAGACTGGTTTGCTCAAGCATCTTATAGCATGTGCTGTTCAGCAAGGTGAACGGGTTCTTGTTACAGCACCTACTAATGCAGCTGTAGATAACATGGTTGAAAAACTTTCTAATGTCAGATTAAATGTTGTGCGGGTTGGAAATCCAGCCCGGATATCAAAAACAGTGGCATCGAAGTCTTTGGAAGAAATTGTAAATGCTAAGCTTGCAAGTTTTCGAGAAGAATATGAGAGAAAGAAGTCAGATTTAAGAAAAGATCTAAGACATTGTTTAAGGGATGATTCACTAGCTGCGGGCATACGGCAACTTCTGAAGCAGCTGGGAAGGTCACTGAAGAAAAAGGAAAAGCAGATAGTAAATGAAGTTCTATCCAGTGCTCAGGTTGTGCTTGCCACTAATACTGGAGCAGCTGACCCTTTGATTCGAAGACTAGATACTTTTGACTTGGTCGTCATAGATGAAGCTGGACAGGCAATTGAACCCTCTTGCTGGATTCCTATATTGCAAGGTAAGCGGTGTATTCTTGCTGGTGATCAATGCCAACTTGCTCCTGTCATACTATCTAGAAAGGCCTTGGAAGGTGGTCTGAGAATATCTCTATTGGAAAGAGCTGCAACTTTACATGAAGGGATTCTCACCACTAGGTTAACTACACAATACCGAATGAATGATGCTATTTCTAGTTGGGCTTCGAAGGAGATGTACGGAGGATTGTTGAAGTCCTCTGATACTGTATCTTCTCATCTTCTTGTAGACTCTCCTTTCGTCAAGCCTACCTGGATAACACAATGCCCACTACTATTGTTAGATACCAGAATGCCATATGGAAGTCTGTCAGTTGGTTGCGAAGAGCATCTAGATCCAGCTGGAACAGGCTCACTTTATAATGAAGGAGAAGCTGAGATAGTTTTGCAGCATGTCTTTTCCTTAATTTATTCTGGTGTTAGCCCAGCTGCTATTGCAGTGCAATCTCCCTATGTTGCTCAAGTACAACTTTTGAGGGACAGGCTGGATGAGTTTCCAGAAGCCGCAGGCACAGAGGTTGCAACCATTGACAGTTTTCAAGGTCGGGAAGCTGATGCGGTAATTTTATCGATGGTTCGATCAAACACATTGGGAGCTGTTGGATTCCTCGGGGATAGCAGAAGAATCAACGTTGCCATCACAAGAGCACGCAAACATGTGGCTTTGGTCTGTGACAGCTCGACTATATGCCACAATACCTTCTTAGCAAGACTTCTTCGTCATATTAGACACTTTGGTAGAGTGAAGCATGCAGAACCAGGTAGTTTTGGAGGATACGGGCTTGGGATGAATCCAATATTACCTTCCATTAATTAG 2835 0.455 MEIALTCFFCGRVPPTLKLGPAATATPTHHFPCNNASTHLLSSFPPSFRLYRLIPNATNSTQPKVSTNSKTRRRRRRSCETQVVVEEAAAVHHNGDPIGKKDLGKSVMRWIRDSMRAMSSDLAAAEMLGEMELWERMGPGLPFIMQAQPYLNAVPMPIGLEGVCLKACTHYPTLFDHFQRELRAVLQDLQNDNSIQDWRDTKSWKLLKQLANSAQHRAVVRKIEQPKSVQGVLGMDLEKVKAIQHRIDEFTNRMSELLSVERDAELEFTQEELDAVPKPDDVSDSSKPLDFLVSHSQPQQEHCDTICNLTAISTSTGLGGMHLVLFKVEGNHRLPPTALSPGDMVCVRTYDSRGAITTSCIQGFVNSFGDDGYSITVALESRHGDPTFSKLFGKNVRIDRIQGLADTLTYERNCEALMLLQKNGLRKKNPSISVVATLFGDGEDVAWLEKNNFADWAEEKSYRILGSDSFDDSQGRAIALGLNKKRPVLVIQGPPGTGKTGLLKHLIACAVQQGERVLVTAPTNAAVDNMVEKLSNVRLNVVRVGNPARISKTVASKSLEEIVNAKLASFREEYERKKSDLRKDLRHCLRDDSLAAGIRQLLKQLGRSLKKKEKQIVNEVLSSAQVVLATNTGAADPLIRRLDTFDLVVIDEAGQAIEPSCWIPILQGKRCILAGDQCQLAPVILSRKALEGGLRISLLERAATLHEGILTTRLTTQYRMNDAISSWASKEMYGGLLKSSDTVSSHLLVDSPFVKPTWITQCPLLLLDTRMPYGSLSVGCEEHLDPAGTGSLYNEGEAEIVLQHVFSLIYSGVSPAAIAVQSPYVAQVQLLRDRLDEFPEAAGTEVATIDSFQGREADAVILSMVRSNTLGAVGFLGDSRRINVAITRARKHVALVCDSSTICHNTFLARLLRHIRHFGRVKHAEPGSFGGYGLGMNPILPSIN 944
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7826g00003 944 SMART AAA_5 485 700 IPR003593 GO:0016887
Vium7826g00003 944 Pfam AAA domain 696 899 IPR041679 -
Vium7826g00003 944 CDD SF1_C_Upf1 720 916 IPR047187 -
Vium7826g00003 944 PANTHER DNA2/NAM7 HELICASE FAMILY MEMBER 117 927 - -
Vium7826g00003 944 FunFam DNA-binding protein SMUBP-2 isoform X2 273 404 - -
Vium7826g00003 944 Gene3D - 254 702 IPR027417 -
Vium7826g00003 944 Pfam AAA domain 470 686 IPR041677 GO:0004386
Vium7826g00003 944 SMART ultradead3 466 718 IPR014001 -
Vium7826g00003 944 MobiDBLite consensus disorder prediction 59 78 - -
Vium7826g00003 944 FunFam DNA helicase A 718 926 - -
Vium7826g00003 944 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 469 906 IPR027417 -
Vium7826g00003 944 Gene3D - 273 404 - -
Vium7826g00003 944 CDD DEXXQc_SMUBP2 469 719 - -
Vium7826g00003 944 Coils Coil 571 591 - -
Vium7826g00003 944 Gene3D - 718 926 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7826g00003 Vium-Chr7826 14416 28171 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7826g00003 464 659 Core DNA Replication Machinery Family AT1G08840 26.263 2.74e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7826g00003 - - gmx:100799347 1624.37