Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7826g00001 ATGGACACATCTCTGGTGTTTAAGGTGCAGAGGCGGGAGCCAGAGCTGATAGCTCCGGCGAAGGCCACTCCTCGCGAAGTGAAGCTGCTCTCAGACATAGATGACCAAGACGGGTTAAGGTTTCAGATTCCAGTGATACAGTTCTATCGATATGATCCAGCGCTGGCAGGGAGAGACCCTGTTGGGGTTATCAGAGAGGCTTTGGCCAAAACGCTTGTGTTTTACTATCCCTTTGCAGGTAGGCTGAGGGAAGGAGCCGGTCGGAAACTCATGGTGGACTGCACAGGGGAGGGTGTTTTATTCATTGAAGCTGATGCAGATGTCACACTCGCTCAATTTGGTCACGCTCTTCAACCTCCTTTCCCCTGCTGGGAGAATCTTCTTTACGATGTTCCTTCCTCCCAAGGAGTTCTTCACACTCCCCTTCTCCTCATCCAGGTAACGCGCCTGAAGTGCGGCGGTTTCATATTCGCGCTCCGTCTGAACCACACCATGAGTGACGCAGCGGGGCTGGTCCAGTTCATGAACGCCGTGGGAGAGATAGCGCGCGGGAGGCAGGAGCCATCGGTCCCACCTGTGTGGCGCAGAGAACTTCTGAACGCGCGGGACCCACCGCGAGTGACGTGCATCCACCGTGAGTACGACGTCGTCCCCGACACGAAAGGCACGATCATCCCCGTGGACGACATGGCCCACCGCTCCTTCTTCTTCGGCCGCAGCGAACTTTCGGCCATCCGGCGCCTCCTCCCCCCTCACCAGAACCAGTGCTCCAGCTTCGATGTCCTGACCGCGTGCCTATGGAGGTGCCGCACCCTGGCCCTGCAACCTGACAGCGACGAGGAGGTCCGCATTATATGCATCGTGAACGCGCGCTCCAAATTCAACCCTCCTCTGCCAGAAGGTTACTACGGCAACGTTTTTGCTTTCTCCGTGGCGGTTACGACTGCGGGAAAGTTATGCGAGAATCCGTTGGGGTATGCTTTGGAGTTGGTGAGGAAGGCGAAGGCGGATGTGAGCGAGGAGTACATGCAGTCGTTGGCAGATCTGATGGTTACAAGAGGACGGCCTCACTTCACGGTGGTGAGGTCGTATCTGGTGTCGGATGTGAGACGAGCAGGGTTCGAAGACGTTGACTTTGGGTGGGGTAAAGCTGTGTATGGAGGACCCGCGAAGGGCGGTGTTGGAGCCATTCCTGGTGTGGCTAGCTTTTACATACCCTTCAGAAATGATAAGGGAGAAGAAGGTTTGGTTATGCCAGTTTGCTTACCCTCTGAAGCCATGCAGAGGTTTGAGAAGGAGTTGGACTCTGTGCTCAACAATCGCCTTCCACCAACTATTAATACTATTTCTTCTTCAAATTCCAGGCAGCTCCTTCTTTCTTCCTTGTAG 1389 0.5508 MDTSLVFKVQRREPELIAPAKATPREVKLLSDIDDQDGLRFQIPVIQFYRYDPALAGRDPVGVIREALAKTLVFYYPFAGRLREGAGRKLMVDCTGEGVLFIEADADVTLAQFGHALQPPFPCWENLLYDVPSSQGVLHTPLLLIQVTRLKCGGFIFALRLNHTMSDAAGLVQFMNAVGEIARGRQEPSVPPVWRRELLNARDPPRVTCIHREYDVVPDTKGTIIPVDDMAHRSFFFGRSELSAIRRLLPPHQNQCSSFDVLTACLWRCRTLALQPDSDEEVRIICIVNARSKFNPPLPEGYYGNVFAFSVAVTTAGKLCENPLGYALELVRKAKADVSEEYMQSLADLMVTRGRPHFTVVRSYLVSDVRRAGFEDVDFGWGKAVYGGPAKGGVGAIPGVASFYIPFRNDKGEEGLVMPVCLPSEAMQRFEKELDSVLNNRLPPTINTISSSNSRQLLLSSL 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7826g00001 462 Pfam Transferase family 8 434 - -
Vium7826g00001 462 Gene3D - 220 434 IPR023213 -
Vium7826g00001 462 Gene3D - 4 216 IPR023213 -
Vium7826g00001 462 PANTHER ACYL TRANSFERASE 4 7 437 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7826g00001 Vium-Chr7826 2086 3953 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7826g00001 8 434 Monolignol Biosynthesis Gene Families AT5G48930 31.910 2.56e-56 191
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7826g00001 K19861 - gmx:100797017 781.556