Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7823g00003 ATGTGCATCCAGGAACCTTTTGTGAACATCCCAGAGGACACAATCCGTGAAGCGCTGAAAGTTGTCCTTGATGTCAGGAATCACCCAGTTATAATTCACTGTAAGCGGGGAAAGCACCGAACGGGTTGTTTGGTAGGATGCTATAGAAAATTGCAGAAGTGGTGCTTGTCATCTGTGTTTGATGAGTATCAGCGCTTTGCAGCTGCGAAAGCAAGAGTTTCAGATCAGAGGTTTGTAGAGTTGTTTGATATTTCCAGCATGAAACATTTGCCTATAACCTTTTCATGTCTGAAGAGGTAA 300 0.4333 MCIQEPFVNIPEDTIREALKVVLDVRNHPVIIHCKRGKHRTGCLVGCYRKLQKWCLSSVFDEYQRFAAAKARVSDQRFVELFDISSMKHLPITFSCLKR 99
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7823g00003 99 PANTHER TYROSINE-PROTEIN PHOSPHATASE 4 88 - -
Vium7823g00003 99 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 6 84 IPR029021 -
Vium7823g00003 99 ProSitePatterns Tyrosine specific protein phosphatases active site. 32 42 IPR016130 GO:0016311|GO:0016791
Vium7823g00003 99 Gene3D Protein tyrosine phosphatase superfamily 3 86 IPR029021 -
Vium7823g00003 99 Pfam Tyrosine phosphatase family 5 89 IPR004861 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7823g00003 Vium-Chr7823 56 3215 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7823g00003 4 99 Protein tyrosine phosphatase (PTP) family AT4G03960 77.083 2.03e-56 171
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7823g00003 K18045 - gmx:100799968 196.438