Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7823g00002 ATGTGCATCCAGGAACCTTTTGTGAACATCCCAGAGGACACAATCCGTGAAGCGCTGAAAGTTGTCCTTGATGTCAGGAATCACCCAGTTATAATTCACTGTAAGCGGGGAAAGCACCGAACGGGTTGTTTGGTAGGATGCTATAGAAAATTGCAGAAGTGGTGCTTGTCATCTGTGTTTGATGAGTATCAGCGCTTTGCAGCTGCGAAAGCAAGAGTTTCAGATCAGAGTTGGTGA 237 0.4599 MCIQEPFVNIPEDTIREALKVVLDVRNHPVIIHCKRGKHRTGCLVGCYRKLQKWCLSSVFDEYQRFAAAKARVSDQSW 78
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7823g00002 78 ProSitePatterns Tyrosine specific protein phosphatases active site. 32 42 IPR016130 GO:0016311|GO:0016791
Vium7823g00002 78 Gene3D Protein tyrosine phosphatase superfamily 3 78 IPR029021 -
Vium7823g00002 78 Pfam Tyrosine phosphatase family 5 77 IPR004861 -
Vium7823g00002 78 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 6 76 IPR029021 -
Vium7823g00002 78 PANTHER TYROSINE-PROTEIN PHOSPHATASE 4 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7823g00002 Vium-Chr7823 46 3215 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7823g00002 4 78 Protein tyrosine phosphatase (PTP) family AT4G03960 77.333 8.60e-43 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7823g00002 K18045 - gmx:100814279 154.451