Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7823g00001 ATGTGCATCCAGGAACCTTTTGTGAACATCCCAGAGGACACAATCCGTGAAGCGCTGAAAGTTGTCCTTGATGTCAGGAATCACCCAGTTATAATTCACTGTAAGCGGGGAAAGCACCGAACGGGTTGTTTGGTAGGATGCTATAGAAAATTGCAGAAGTGGTGCTTGTCATCTGTGTTTGATGAGTATCAGCGCTTTGCAGCTGCGAAAGCAAGAGTTTCAGATCAGAGTTTGGAGTGA 240 0.4583 MCIQEPFVNIPEDTIREALKVVLDVRNHPVIIHCKRGKHRTGCLVGCYRKLQKWCLSSVFDEYQRFAAAKARVSDQSLE 79
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7823g00001 79 Pfam Tyrosine phosphatase family 5 77 IPR004861 -
Vium7823g00001 79 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 6 76 IPR029021 -
Vium7823g00001 79 ProSitePatterns Tyrosine specific protein phosphatases active site. 32 42 IPR016130 GO:0016311|GO:0016791
Vium7823g00001 79 PANTHER TYROSINE-PROTEIN PHOSPHATASE 4 77 - -
Vium7823g00001 79 Gene3D Protein tyrosine phosphatase superfamily 3 78 IPR029021 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7823g00001 Vium-Chr7823 45 4439 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7823g00001 4 76 Protein tyrosine phosphatase (PTP) family AT4G03960 79.452 1.02e-42 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7823g00001 K18045 - gmx:100814279 154.451