Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7822g00004 ATGATTTCCCACCACAATGGAAACCATCCCTTTCTTTTCTTCCATGGTTCATATAAAAAACCCCTAACAACACGAAACCCGTTTCCCCTTTCTCCCAAAGTTCCAAGCTTTCCTAGTTCTACGGCTACCCTTGTTCTTCAAGTCTCAAGGGTGCATTTCATTCACTCACACTTTTCTGTGAAACGATTATCTCGGCAGGTAAAGGGGAAAGTGCAGGATGTGCTGTTAGATTACTTGCATTCGAGCCGGGGATACAGCTTCTTGGATGCTGAGTTCATTAGCAAAAATTCACCATCTTTTGTTCAAGGTTTGGTGTCAGAGTTTCGTGGACAAGATGATGATGTTGCCACTTGTTTGAGGAAGTGGCTGTGGTACAACCCCATTAATGAGTTTGAACCATTCTTTGAGAGTTTGGGGATTAGCCCTCGTGAGTTGCCTTTGTTTCTCCCACGTGGTATGATGTATTTGTCTGATGATCATGTTATGCTTGCCAATTTCCACGTTTTTAGTAATTATGGAGTTCCAAGGAATAGGGTAGGGAAGATTTATCGAGAGGCAAAGGAGGTTTTCGGGTATTCTAATGGATTGCTGTTGTCGAAATTTCGAGGTTATGAAAAGTTAGGTTTGAGTAGATCCATGGTCATCAAGCTTGTTGTTTGTTGCCCTTCACTTTTGGTTGGTGAAACAAGTGTTGAATTGGCCAATGTTCTGGATTGGTTGAAGAAAATTGGTATTGGACTTGATTGGATTGGGAATTACATGTCTTGTTTGAAAACATATGACCCAAGAAAAATGCTTGATGCTATACAATTTTTTCATAAAGTTGGTTATTCTGAAGAACAGATGCACAATTTCTTCAAGGAAAACCCCGCATTATTACTGGAAGGTCTTGAGAAGAAGGTGTATGTATTTTTGGGTTTAGCATTTAAGTTAGATCTCAATAGGAATGCAATTTATTCTTGTTTTGTTGAATATCCTCATATCTTGACTAAGAAGTGTGGAAAAAATCTTTTGGGAGTGATTGGCTTTTTGCATTATGTTGGAATGGATTTAGATGACATTTCGCGTATCTTGTCTAACCACATGCATCTCCTGAGCTCACATCCCTTGAAAGGCCCTAAAGCTGTTTGTTCGCAGTTAAAACTTAGAAAAGCTGATCTATGCCAAATCATAAAGGATGATCCACTGAAGCTAGTTAGTTTGGCTTCAAAACTGAAACAGAATTCTAATTTACAGTTATTGCGTGACGACCCAAGTAAACATTTGGAGAAAACAACATTCTTGCTGAAGTTGGGATATGCTGAGAACTCTGAGGAGATGGCAAAAGCAATAAAAAGATTCCGAGGGAGAGGTGATCAATTACAGGAGAGGTTTGATTGCCTTGTTGAAGCTGGTTTGGACTATAACATTGCACTCAAAATGATAAAATGTGCTCCTATGATTCTAAACCAGAACAAAGTTGTGATTCAAAAGAAGATTGATTTCTTAATAAACATTTTAGGTTACCCATTGGAGTGCGTCGTGGCATTTCCGGCATACTTGTGTTATGATTTAGAGAGAATCATGCTCAGATTTTCAATGTATGCTTGGGTGGCAGAAAGGAAAGCAGCAAAACCTATGATGGCCTTGAGCACTATCCTCGCATCCTCTGATGAAAAGTTTGTAAAATACATTGTGAATGCACATCCTGAAGGTCCAATCATCTGGGATGGTCTAAAGAAGTTATTGCAAGATAAGAGCCAGCTCTTCCCTTAA 1755 0.3926 MISHHNGNHPFLFFHGSYKKPLTTRNPFPLSPKVPSFPSSTATLVLQVSRVHFIHSHFSVKRLSRQVKGKVQDVLLDYLHSSRGYSFLDAEFISKNSPSFVQGLVSEFRGQDDDVATCLRKWLWYNPINEFEPFFESLGISPRELPLFLPRGMMYLSDDHVMLANFHVFSNYGVPRNRVGKIYREAKEVFGYSNGLLLSKFRGYEKLGLSRSMVIKLVVCCPSLLVGETSVELANVLDWLKKIGIGLDWIGNYMSCLKTYDPRKMLDAIQFFHKVGYSEEQMHNFFKENPALLLEGLEKKVYVFLGLAFKLDLNRNAIYSCFVEYPHILTKKCGKNLLGVIGFLHYVGMDLDDISRILSNHMHLLSSHPLKGPKAVCSQLKLRKADLCQIIKDDPLKLVSLASKLKQNSNLQLLRDDPSKHLEKTTFLLKLGYAENSEEMAKAIKRFRGRGDQLQERFDCLVEAGLDYNIALKMIKCAPMILNQNKVVIQKKIDFLINILGYPLECVVAFPAYLCYDLERIMLRFSMYAWVAERKAAKPMMALSTILASSDEKFVKYIVNAHPEGPIIWDGLKKLLQDKSQLFP 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7822g00004 584 SMART mt_12 472 503 IPR003690 GO:0003690|GO:0006355
Vium7822g00004 584 SMART mt_12 504 535 IPR003690 GO:0003690|GO:0006355
Vium7822g00004 584 SMART mt_12 215 246 IPR003690 GO:0003690|GO:0006355
Vium7822g00004 584 SMART mt_12 180 210 IPR003690 GO:0003690|GO:0006355
Vium7822g00004 584 SMART mt_12 319 350 IPR003690 GO:0003690|GO:0006355
Vium7822g00004 584 Pfam mTERF 451 554 IPR003690 GO:0003690|GO:0006355
Vium7822g00004 584 Pfam mTERF 269 409 IPR003690 GO:0003690|GO:0006355
Vium7822g00004 584 PANTHER CGI-12 PROTEIN-RELATED 75 560 IPR003690 GO:0003690|GO:0006355
Vium7822g00004 584 Gene3D Transcription termination factor 3, mitochondrial 124 255 IPR038538 -
Vium7822g00004 584 Gene3D Transcription termination factor 3, mitochondrial 303 565 IPR038538 -
Vium7822g00004 584 FunFam mTERF family protein 109 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7822g00004 Vium-Chr7822 24320 26383 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vium7822g00004 mTERF 2.9e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7822g00004 - - aprc:113846643 886.715