Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7822g00003 ATGATTTCCCTGCTGATTTCAAGTGGCTTCTTTCCTTCCCACCGGGCCATGCCTCCAAGACCCCTTCCACGAAAAAACCCATTTTTCATTTCCCTCAAAGTTCGATGCTTTCTTGCTTCAGAGTCAAATCCAGTTCCCGATTTTCCTCCACCGAGTTCGGTTCTCTTGCCACGTTCCATCAAACGGGTCTCTCGCCTCTTGAGGACTGAACTTCAACGCGCTCTAATGGATTACCTGCATTTCACGCGCGGCTACACCTTCTCCGACGCGGAGTACATCAGCAAGAACTCGCCTCGTTTTGTTGAATCATTGGTGTCCATGATTGACGAGAAAGATGACGCTCCACGATCGTTACGGAAGTTCTTCAGGTACAACCCCATCAACGAGTTTGAACCGTTTTTCGAGAGTTTGGGAATTGGCCTTTCCGAGTTGCATTTGTTTCTCCCCCATGACATGATTTTCTTGGCTGATGATCACGTGTTGCTTCATAATTTCCATGTTTTGTGTAACTACGGGGTGCCAAGGAATAGAATGGGGAGGTTCTATAAAGAGGCAAAAGAAATTTTTGGGTATGCCGGTGGTTTGTTGGAGTCAAAGTTGCAAGGCTATGAGAATTTGGGTTTGAGTAGATCAAATGTTGTGAAGCTTGTTGTTTGCTGTCCTTTGCTTTTGGTTGGTGATGTCAATTATGAATTAGTTGCTGTGCTTGAGTGGATGAAGAGAATAGGGATTGAAAGTGATTTGATGGTGAATTACTTGTCTTGTTCAAGGACATATAGTTGGAAAAGAATGCTTGATACATTGCAGTTTCTTCATAAAGTGGGTTATTCTGAGAAACGGATCCACAATTTGTTTAGGGGAAACCCGAAACTGTTTTTGGAAGGTATTGGGAAGAAGGTGTACTTATTTTTTGGTCGATTGGTTAAAATTGGTGTTGAGATAAATGTGATTTATTCTTATTTTGTGGAGTATCCCAATATCTTGTCATATAAGTGTGCGAAAAATATGTTGAAAGTGATTGGCTTTTTGTGTGCTATTGGAATGGGAAAAGATGACATTTCTCACATTTTCTCTAAGCACGTGCATCTCTTGAGTACATGTTCCTTGAAAGGTCATAAAACTGTCTGTCAGGAGTTAAAAGTTGGAAAAGCTGATTTGTATCAAATCATAAAGGATGATCCATTGAAGCTAATTAGTTTTTCATCAAAGCAGCAACAGAAGAGCGATGGAAAGGTAGATAGTCATGACCCACGAAACTATTTGGAAAAAAGAACTTTCTTGCTGAAATTGGGATATACTGAAAACTCTGAAGAGATGGCAAGAGCATTAAGAATGTTCAGAGGTAGAGGTGATCAATTACAAGAGAGGTTTGATTGCCTGGTAGAAGCTGGTTTGGACTATAATAGTGCGATCGAAATGATAAAACGAGCTCCTATGATTCTAAGCCAGAACAAAACTGTAATTAAAAGGAAAATTGATTTCTTAAAAGATGTTTTAGATTACCCACTAGAATGTCTCGTGGGATTTCCAACATACTTTTGCCATGATTTGGACAAAATTGTTGAAAGACTTTCAATGTATGCATGGCTGAAGGAGAGGAATGCCATAAATCCTACGTTAACCTTGAGTACCATAGTTGCATCCAATGATAAACGCTTTGAAAAGTACTTTGTGAACGTGCATCCTCAAGGTCCAGCCGTCTGGAAGGGTTTAAAAAGGTTATCTAAAAAAGATAAGAACTAA 1743 0.3999 MISLLISSGFFPSHRAMPPRPLPRKNPFFISLKVRCFLASESNPVPDFPPPSSVLLPRSIKRVSRLLRTELQRALMDYLHFTRGYTFSDAEYISKNSPRFVESLVSMIDEKDDAPRSLRKFFRYNPINEFEPFFESLGIGLSELHLFLPHDMIFLADDHVLLHNFHVLCNYGVPRNRMGRFYKEAKEIFGYAGGLLESKLQGYENLGLSRSNVVKLVVCCPLLLVGDVNYELVAVLEWMKRIGIESDLMVNYLSCSRTYSWKRMLDTLQFLHKVGYSEKRIHNLFRGNPKLFLEGIGKKVYLFFGRLVKIGVEINVIYSYFVEYPNILSYKCAKNMLKVIGFLCAIGMGKDDISHIFSKHVHLLSTCSLKGHKTVCQELKVGKADLYQIIKDDPLKLISFSSKQQQKSDGKVDSHDPRNYLEKRTFLLKLGYTENSEEMARALRMFRGRGDQLQERFDCLVEAGLDYNSAIEMIKRAPMILSQNKTVIKRKIDFLKDVLDYPLECLVGFPTYFCHDLDKIVERLSMYAWLKERNAINPTLTLSTIVASNDKRFEKYFVNVHPQGPAVWKGLKRLSKKDKN 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7822g00003 580 Gene3D Transcription termination factor 3, mitochondrial 104 251 IPR038538 -
Vium7822g00003 580 Gene3D Transcription termination factor 3, mitochondrial 302 569 IPR038538 -
Vium7822g00003 580 FunFam Transcription termination factor MTEF18, mitochondrial 303 571 - -
Vium7822g00003 580 SMART mt_12 179 209 IPR003690 GO:0003690|GO:0006355
Vium7822g00003 580 SMART mt_12 471 502 IPR003690 GO:0003690|GO:0006355
Vium7822g00003 580 SMART mt_12 436 466 IPR003690 GO:0003690|GO:0006355
Vium7822g00003 580 SMART mt_12 503 534 IPR003690 GO:0003690|GO:0006355
Vium7822g00003 580 SMART mt_12 214 245 IPR003690 GO:0003690|GO:0006355
Vium7822g00003 580 SMART mt_12 319 349 IPR003690 GO:0003690|GO:0006355
Vium7822g00003 580 PANTHER CGI-12 PROTEIN-RELATED 71 560 IPR003690 GO:0003690|GO:0006355
Vium7822g00003 580 FunFam mTERF family protein 107 258 - -
Vium7822g00003 580 Pfam mTERF 268 394 IPR003690 GO:0003690|GO:0006355
Vium7822g00003 580 Pfam mTERF 440 554 IPR003690 GO:0003690|GO:0006355
Vium7822g00003 580 Pfam mTERF 246 364 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7822g00003 Vium-Chr7822 14079 16728 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vium7822g00003 mTERF 7.5e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7822g00003 - - gmx:100803162 946.421