Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7818g00011 ATGGGAACTCCACCACCGGATGAACTCGTGAAGAAGATCCAACAGTTAGAAGAAGGACACGCGCACTTGAAGCAAGAAATGTCAAAGCTCAAACTCTCCGATGTGAGGCATGGACATCGCCAGAGGTCGCACTCCGTCTCTCCGCAGCGTTCCAGATTGGGCGCTCCGCCGAGGAGGCGGACTGATGCGCCGGCAGCTGCGTGGAAGAGAGGTTCGTGTTCCTTCAAACAATCCTCGCCGCTGCAGAGAGAGAGCCGCGGCGGCGGCGATCCTCAAATTCACGGCGGCGGCGGAGGAGGTGGAGGAGAAGGAGAAGGAGAAGGTGCTACTCCGCGCCGTGGCCCTTCCGCCGTGAATTTCACTGAACGGCAGTATCTTAATATTTTGCAGTCAATGGGACAGTCTGTTCATATATTGGATCTTAACTGTCGCATAATATACTGGAACCGTAGTGCGGAAAATCTGTATGGTTATACTGCAGAGGAAGCTTTAGGGCGGGATGGGATTGAGCTGCTTGTAGACCCTAGGGATTTGGGCATGGCCAATGATACAGTTAACCGTGTAATGATGGGAGAGAACTGGACGGGGCAATTTCCGGTCAAGAATAAGATGGGAGAGAAGTTCATAGCTGTAGCGACTAATACACCTTTCTATGATGATGATGGAAGCTTAGTTGGGATAATTTGTGTCTCTTGTGATTCACGGCCTTTTCTTGAAATGAAAGTTCCGATGTCTGGTGTAAGGAACACTGAGTTAGATTTGGACTCAGGCGGAACTCGATCTAGAAGTAGCATTACGAATAAACTTGGCATTGATACTCAGCAGCCACTTCAAGTTGCTCTTGCGTCGAAAATTTCAAATTTGGCATCAAAGGTGAGTAACAAAGTAAAGTCAAGGATCTGGACGGGAGAAAATAATGTGGATCGTGAAGTTGGAAGTGGTGAAAGTCATCATTCTGAGCATAGTTTGTCGGAATCTGTTCTTTCGGACCAGAGAGAGGATGCTAATTCCAGTGGAGCTAGCACCCCCAGAGGTGAGGTGGCACCGTCCCATTTTGGTGTGCTTTCTCACGGCGAAGAAAAGTCCCAGGGAAAATCTTCGAGAGGGTCTGGTGACGAGAGTGAAGGAAAATCTATTCACAAAATCATACCTGCTAAGGCTGAAGCCTGGATTCAAAGGAAAACATTATCATGGCCATGGAGAACAAAGGACCGAGAAGGTTCAGATGGATCAGAGGGAACCAATGTTCGAGTTACTGGGCCCTGGAGACAGAATGATCGAGAAAATGAATCAGTTAATCAGAAGATTCTGTCTTCTAGCTTGAAGCAAGAAAGCCAGGGAGGTGAAAGTAATCGCCCTAATAACAGTGAAGTTTCAGGATCCTGGTCCTCCTTTAATGTTAACAGCACAAGCAGTGCCAGCAGCTGTGGGAGTGCTGGCAGTTGTGCTGTCAATAATAAAGTGGATGTGGACACTGATTGCTTGGATTATGAAATTTTGTGGGAGGACCTGACAATTGGAGAACAAATTGGGCAAGGTTCTTGTGGAACTGTATATCATGCTCTGTGGTATGGATCAGATGTTGCCGTTAAAGTTTTCTCAAAGCAAGAATATTCAGATGATGTGATATTGTCCTTCAGACAAGAGGTGTCTGTAATGAAAAGACTTCGACACCCAAATATTCTTCTCTTTATGGGGGCCGTGACTTCACCTCAACGTCTCTGCATCGTGACAGAGTTTCTCCCACGTGGAAGCTTGTGCCGCTTGTTACACAGAAACACTTCTAAACTTGACTGGAGACGGCGAGTTCATATGGCCTTGGATATTGCACGGGGCGTAAATTATCTTCATCATTCTAACCCACCTATCATCCACAGAGATCTGAAGTCTTCAAATCTTCTAGTTGATAAGAACTGGACTGTGAAGGTTGGTGATTTTGGTCTTTCACGAGTTAAGCACGAAACATATCTCACAACTAAGACTGGCAGGGGCACGCCCCAATGGATGGCACCCGAAGTTCTTCGTAATGAACCCTCCGATGAGAAACTTTGA 2052 0.4698 MGTPPPDELVKKIQQLEEGHAHLKQEMSKLKLSDVRHGHRQRSHSVSPQRSRLGAPPRRRTDAPAAAWKRGSCSFKQSSPLQRESRGGGDPQIHGGGGGGGGEGEGEGATPRRGPSAVNFTERQYLNILQSMGQSVHILDLNCRIIYWNRSAENLYGYTAEEALGRDGIELLVDPRDLGMANDTVNRVMMGENWTGQFPVKNKMGEKFIAVATNTPFYDDDGSLVGIICVSCDSRPFLEMKVPMSGVRNTELDLDSGGTRSRSSITNKLGIDTQQPLQVALASKISNLASKVSNKVKSRIWTGENNVDREVGSGESHHSEHSLSESVLSDQREDANSSGASTPRGEVAPSHFGVLSHGEEKSQGKSSRGSGDESEGKSIHKIIPAKAEAWIQRKTLSWPWRTKDREGSDGSEGTNVRVTGPWRQNDRENESVNQKILSSSLKQESQGGESNRPNNSEVSGSWSSFNVNSTSSASSCGSAGSCAVNNKVDVDTDCLDYEILWEDLTIGEQIGQGSCGTVYHALWYGSDVAVKVFSKQEYSDDVILSFRQEVSVMKRLRHPNILLFMGAVTSPQRLCIVTEFLPRGSLCRLLHRNTSKLDWRRRVHMALDIARGVNYLHHSNPPIIHRDLKSSNLLVDKNWTVKVGDFGLSRVKHETYLTTKTGRGTPQWMAPEVLRNEPSDEKL 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7818g00011 683 SUPERFAMILY Protein kinase-like (PK-like) 495 680 IPR011009 -
Vium7818g00011 683 Coils Coil 13 33 - -
Vium7818g00011 683 MobiDBLite consensus disorder prediction 401 463 - -
Vium7818g00011 683 MobiDBLite consensus disorder prediction 310 328 - -
Vium7818g00011 683 FunFam PAS domain-containing protein tyrosine kinase 497 581 - -
Vium7818g00011 683 MobiDBLite consensus disorder prediction 412 463 - -
Vium7818g00011 683 CDD PAS 132 233 IPR000014 -
Vium7818g00011 683 Gene3D Phosphorylase Kinase; domain 1 497 581 - -
Vium7818g00011 683 Gene3D Transferase(Phosphotransferase) domain 1 582 683 - -
Vium7818g00011 683 SMART serkin_6 504 683 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium7818g00011 683 MobiDBLite consensus disorder prediction 361 382 - -
Vium7818g00011 683 ProSiteProfiles Protein kinase domain profile. 504 683 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium7818g00011 683 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 190 678 - -
Vium7818g00011 683 Pfam PAS fold 124 230 IPR013767 GO:0006355
Vium7818g00011 683 SMART pas_2 123 190 IPR000014 -
Vium7818g00011 683 Gene3D PAS domain 133 235 - -
Vium7818g00011 683 Pfam Protein tyrosine and serine/threonine kinase 504 677 IPR001245 GO:0004672|GO:0006468
Vium7818g00011 683 MobiDBLite consensus disorder prediction 307 386 - -
Vium7818g00011 683 NCBIfam PAS domain S-box protein 122 230 IPR000014 -
Vium7818g00011 683 SUPERFAMILY PYP-like sensor domain (PAS domain) 127 230 IPR035965 -
Vium7818g00011 683 ProSitePatterns Serine/Threonine protein kinases active-site signature. 623 635 IPR008271 GO:0004672|GO:0006468
Vium7818g00011 683 MobiDBLite consensus disorder prediction 329 344 - -
Vium7818g00011 683 MobiDBLite consensus disorder prediction 30 116 - -
Vium7818g00011 683 ProSiteProfiles PAS repeat profile. 121 192 IPR000014 -
Vium7818g00011 683 CDD STKc_MAP3K-like 510 682 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7818g00011 Vium-Chr7818 85188 91395 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7818g00011 1 682 MAP Kinase Kinase Kinase AT3G06620 56.034 0.0 760
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Vium7818g00011 PK_Tyr_Ser-Thr 5.2e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7818g00011 - - pvu:PHAVU_003G114400g 1231.08