Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7818g00010 ATGGGAACTCCACCACCGGATGAACTCGTGAAGAAGATCCAACAGTTAGAAGAAGGACACGCGCACTTGAAGCAAGAAATGTCAAAGCTCAAACTCTCCGATGTGAGGCATGGACATCGCCAGAGGTCGCACTCCGTCTCTCCGCAGCGTTCCAGATTGGGCGCTCCGCCGAGGAGGCGGACTGATGCGCCGGCAGCTGCGTGGAAGAGAGGTTCGTGTTCCTTCAAACAATCCTCGCCGCTGCAGAGAGAGAGCCGCGGCGGCGGCGATCCTCAAATTCACGGCGGCGGCGGAGGAGGTGGAGGAGAAGGAGAAGGAGAAGGTGCTACTCCGCGCCGTGGCCCTTCCGCCGTGAATTTCACTGAACGGCAGTATCTTAATATTTTGCAGTCAATGGGACAGTCTGTTCATATATTGGATCTTAACTGTCGCATAATATACTGGAACCGTAGTGCGGAAAATCTGTATGGTTATACTGCAGAGGAAGCTTTAGGGCGGGATGGGATTGAGCTGCTTGTAGACCCTAGGGATTTGGGCATGGCCAATGATACAGTTAACCGTGTAATGATGGGAGAGAACTGGACGGGGCAATTTCCGGTCAAGAATAAGATGGGAGAGAAGTTCATAGCTGTAGCGACTAATACACCTTTCTATGATGATGATGGAAGCTTAGTTGGGATAATTTGTGTCTCTTGTGATTCACGGCCTTTTCTTGAAATGAAAGTTCCGATGTCTGGTGTAAGGAACACTGAGTTAGATTTGGACTCAGGCGGAACTCGATCTAGAAGTAGCATTACGAATAAACTTGGCATTGATACTCAGCAGCCACTTCAAGTTGCTCTTGCGTCGAAAATTTCAAATTTGGCATCAAAGGTGAGTAACAAAGTAAAGTCAAGGATCTGGACGGGAGAAAATAATGTGGATCGTGAAGTTGGAAGTGGTGAAAGTCATCATTCTGAGCATAGTTTGTCGGAATCTGTTCTTTCGGACCAGAGAGAGGATGCTAATTCCAGTGGAGCTAGCACCCCCAGAGGTGAGGTGGCACCGTCCCATTTTGGTGTGCTTTCTCACGGCGAAGAAAAGTCCCAGGGAAAATCTTCGAGAGGGTCTGGTGACGAGAGTGAAGGAAAATCTATTCACAAAATCATACCTGCTAAGGCTGAAGCCTGGATTCAAAGGAAAACATTATCATGGCCATGGAGAACAAAGGACCGAGAAGGTTCAGATGGATCAGAGGGAACCAATGTTCGAGTTACTGGGCCCTGGAGACAGAATGATCGAGAAAATGAATCAGTTAATCAGAAGATTCTGTCTTCTAGCTTGAAGCAAGAAAGCCAGGGAGGTGAAAGTAATCGCCCTAATAACAGTGAAGTTTCAGGATCCTGGTCCTCCTTTAATGTTAACAGCACAAGCAGTGCCAGCAGCTGTGGGAGTGCTGGCAGTTGTGCTGTCAATAATAAAGTGGATGTGGACACTGATTGCTTGGATTATGAAATTTTGTGGGAGGACCTGACAATTGGAGAACAAATTGGGCAAGGTTCTTGTGGAACTGTATATCATGCTCTGTGGTATGGATCAGATGTTGCCGTTAAAGTTTTCTCAAAGCAAGAATATTCAGATGATGTGATATTGTCCTTCAGACAAGAGGTGTCTGTAATGAAAAGACTTCGACACCCAAATATTCTTCTCTTTATGGGGGCCGTGACTTCACCTCAACGTCTCTGCATCGTGACAGAGTTTCTCCCACGTGGAAGCTTGTGCCGCTTGTTACACAGAAACACTTCTAAACTTGACTGGAGACGGCGAGTTCATATGGCCTTGGATATTGCACGGGGCGTAAATTATCTTCATCATTCTAACCCACCTATCATCCACAGAGATCTGAAGTCTTCAAATCTTCTAGTTGATAAGAACTGGACTGTGAAGGTTGGTGATTTTGGTCTTTCACGAGTTAAGCACGAAACATATCTCACAACTAAGACTGGCAGGGGCACGCCCCAATGGATGGCACCCGAAGTTCTTCGTAATGAACCCTCCGATGAGAAATCTGACGTTTACAGCTTTGGAGTGATACTATGGGAAATTGCAACTGAAAAGATACCTTGGGATAATCTCAACTCAATGCAGGTGATTGGCGCTGTAGGATTCATGAATCAACGGCTGGAAATTCCAAAAAATGTCGATCCACGGTGGGCTTCTATAATTGAGAGCTGCTGGCACACCGATCCAGCATGCCGGCCAACGTTCCCGGAACTGCTTGAAAGGCTTAGAGAGCTGCAAAAACAGTATGCCATCCAGTTCCAGGCAACACGATCCGCCAGCAAGGAAAGCACCCAAAAGGAGTCGTAG 2349 0.4717 MGTPPPDELVKKIQQLEEGHAHLKQEMSKLKLSDVRHGHRQRSHSVSPQRSRLGAPPRRRTDAPAAAWKRGSCSFKQSSPLQRESRGGGDPQIHGGGGGGGGEGEGEGATPRRGPSAVNFTERQYLNILQSMGQSVHILDLNCRIIYWNRSAENLYGYTAEEALGRDGIELLVDPRDLGMANDTVNRVMMGENWTGQFPVKNKMGEKFIAVATNTPFYDDDGSLVGIICVSCDSRPFLEMKVPMSGVRNTELDLDSGGTRSRSSITNKLGIDTQQPLQVALASKISNLASKVSNKVKSRIWTGENNVDREVGSGESHHSEHSLSESVLSDQREDANSSGASTPRGEVAPSHFGVLSHGEEKSQGKSSRGSGDESEGKSIHKIIPAKAEAWIQRKTLSWPWRTKDREGSDGSEGTNVRVTGPWRQNDRENESVNQKILSSSLKQESQGGESNRPNNSEVSGSWSSFNVNSTSSASSCGSAGSCAVNNKVDVDTDCLDYEILWEDLTIGEQIGQGSCGTVYHALWYGSDVAVKVFSKQEYSDDVILSFRQEVSVMKRLRHPNILLFMGAVTSPQRLCIVTEFLPRGSLCRLLHRNTSKLDWRRRVHMALDIARGVNYLHHSNPPIIHRDLKSSNLLVDKNWTVKVGDFGLSRVKHETYLTTKTGRGTPQWMAPEVLRNEPSDEKSDVYSFGVILWEIATEKIPWDNLNSMQVIGAVGFMNQRLEIPKNVDPRWASIIESCWHTDPACRPTFPELLERLRELQKQYAIQFQATRSASKESTQKES 782
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7818g00010 782 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 194 762 - -
Vium7818g00010 782 ProSiteProfiles Protein kinase domain profile. 504 759 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium7818g00010 782 Coils Coil 13 33 - -
Vium7818g00010 782 MobiDBLite consensus disorder prediction 310 328 - -
Vium7818g00010 782 MobiDBLite consensus disorder prediction 401 463 - -
Vium7818g00010 782 MobiDBLite consensus disorder prediction 412 463 - -
Vium7818g00010 782 Pfam Protein tyrosine and serine/threonine kinase 504 756 IPR001245 GO:0004672|GO:0006468
Vium7818g00010 782 CDD PAS 132 233 IPR000014 -
Vium7818g00010 782 FunFam PAS domain-containing protein tyrosine kinase 497 581 - -
Vium7818g00010 782 PRINTS Tyrosine kinase catalytic domain signature 664 674 IPR001245 GO:0004672|GO:0006468
Vium7818g00010 782 PRINTS Tyrosine kinase catalytic domain signature 683 705 IPR001245 GO:0004672|GO:0006468
Vium7818g00010 782 PRINTS Tyrosine kinase catalytic domain signature 578 591 IPR001245 GO:0004672|GO:0006468
Vium7818g00010 782 PRINTS Tyrosine kinase catalytic domain signature 727 749 IPR001245 GO:0004672|GO:0006468
Vium7818g00010 782 PRINTS Tyrosine kinase catalytic domain signature 617 635 IPR001245 GO:0004672|GO:0006468
Vium7818g00010 782 MobiDBLite consensus disorder prediction 361 382 - -
Vium7818g00010 782 CDD STKc_MAP3K-like 510 756 - -
Vium7818g00010 782 SMART serkin_6 504 764 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium7818g00010 782 Gene3D Phosphorylase Kinase; domain 1 497 581 - -
Vium7818g00010 782 NCBIfam PAS domain S-box protein 122 230 IPR000014 -
Vium7818g00010 782 SMART pas_2 123 190 IPR000014 -
Vium7818g00010 782 SUPERFAMILY Protein kinase-like (PK-like) 493 756 IPR011009 -
Vium7818g00010 782 MobiDBLite consensus disorder prediction 31 116 - -
Vium7818g00010 782 MobiDBLite consensus disorder prediction 307 386 - -
Vium7818g00010 782 ProSitePatterns Serine/Threonine protein kinases active-site signature. 623 635 IPR008271 GO:0004672|GO:0006468
Vium7818g00010 782 FunFam PAS domain-containing protein tyrosine kinase family protein 582 774 - -
Vium7818g00010 782 SUPERFAMILY PYP-like sensor domain (PAS domain) 127 230 IPR035965 -
Vium7818g00010 782 MobiDBLite consensus disorder prediction 329 344 - -
Vium7818g00010 782 Pfam PAS fold 124 230 IPR013767 GO:0006355
Vium7818g00010 782 ProSiteProfiles PAS repeat profile. 121 192 IPR000014 -
Vium7818g00010 782 Gene3D PAS domain 133 235 - -
Vium7818g00010 782 Gene3D Transferase(Phosphotransferase) domain 1 582 782 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7818g00010 Vium-Chr7818 83673 91386 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7818g00010 1 773 MAP Kinase Kinase Kinase AT3G06620 58.069 0.0 917
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Vium7818g00010 PK_Tyr_Ser-Thr 1.3e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7818g00010 - - pvu:PHAVU_003G114400g 1414.05