Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7806g00001 ATGGTTTCCCGGGAAAACACCAATTGGCTCTTTGATTACGGCTTGATAGATGATATTCCCGTCCCGGATGCCTCCTTCACCGTCCCTTCCTCCGGCTTCACATGGCCTCCTAATGCCTTGAATGCCACTTCCAATGTCGGTGTTGAAGCTGACGGTTCACTGGTGGATTCTGATGGTCTCAAAGAGTCTGGCTCAAAGAAGAGGGTTAGATCGGAGACATGTGCTGCTTCTAGCACCAAGGCATGTCGGGAGAAGTTGCGAAGAGATAAGCTTAACGACAAGTTTGTTGAATTGGGCTCCATTTTGGAGCCTGGAAGGCCTACGAAAACTGATAAGGCTGCTATCCTGATTGATGCTGTCCGTATGGTGACACACTTACGGGGTGAAGCGCAGAAGTTGAAAGACTCTAATCAGGGTCTTCAAGAAAAGATTAAAGAGTTAAAGGCTGAGAAGAATGAACTTAGGGATGAGAAACAGGTGCTCAAGGCAGAGAAGGAGAAGTTAGAGCAGCAGCTGAAATCTTTGAATGCACAACCCAGTTTCATGCCTCCCCCTGCTGCTATCCCTGCTGCATTTGCGGCGCAAGGCCAAGCCCACGGAAACAAGTTGGTACCTTTTATTAGTTATCCAGGAGTTGCAATGTGGCAATTTATGCCACCTGCTGCAGTGGATACCTCACAGGATCACGTACTCCGTCCACCAGTTGCCTAA 711 0.4866 MVSRENTNWLFDYGLIDDIPVPDASFTVPSSGFTWPPNALNATSNVGVEADGSLVDSDGLKESGSKKRVRSETCAASSTKACREKLRRDKLNDKFVELGSILEPGRPTKTDKAAILIDAVRMVTHLRGEAQKLKDSNQGLQEKIKELKAEKNELRDEKQVLKAEKEKLEQQLKSLNAQPSFMPPPAAIPAAFAAQGQAHGNKLVPFISYPGVAMWQFMPPAAVDTSQDHVLRPPVA 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7806g00001 236 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 75 126 IPR011598 GO:0046983
Vium7806g00001 236 Pfam Helix-loop-helix DNA-binding domain 78 126 IPR011598 GO:0046983
Vium7806g00001 236 Gene3D - 78 155 IPR036638 GO:0046983
Vium7806g00001 236 PANTHER BHLH TRANSCRIPTION FACTOR 3 236 IPR044818 GO:0003700|GO:0006355|GO:0006879|GO:0046983
Vium7806g00001 236 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 80 150 IPR036638 GO:0046983
Vium7806g00001 236 CDD bHLH_AtILR3_like 80 155 - -
Vium7806g00001 236 SMART finulus 81 132 IPR011598 GO:0046983
Vium7806g00001 236 Coils Coil 123 178 - -
Vium7806g00001 236 FunFam Transcription factor bHLH34 66 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7806g00001 Vium-Chr7806 3059 6803 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7806g00001 1 236 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 69.710 2.71e-111 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vium7806g00001 HLH 1.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7806g00001 - - gmx:100788858 403.29