Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7805g00003 ATGGACATGGATGTTTGCAGAAATGTATCAGTTTCTAGTGAGTGTCAGCAAGAGCTTCCCACCCTTGATGACCTTTTCTCACATCAGAACATGGAAGAGGATTTTGGCATGGAATGGTTGTCTGTGTTTGTGGAAGACTGTTTTTCCAGTAAGCCAAGTTGCCTCTTGGCACCCCCTGGTGTTGAAACCACGAGCCCTAGCACCAAGCCTTCAAGCACAATGCAAAGACCCCAACAAAGTTACTGTCCTCTGCAGAATTTTTCTGTGCCAGGGAAAGCCAGGAGCAAGAGGAAGAGGCTATCAGCACCAAGGACAAAACACACTCTAAGCACTTGGTCAAATAATTTCAGTACTCAAGTGTTGAGTTCTGACCCTCCTCTCTTGAAACAAGCCTATTGGTTGGCTGATAGTGAACTCATTGTCCCAAAGAAGAAGGATGAGCAAGAAGTGAAAGTGGATATTGTGGTTAGGAAGGAGAAACTGGGGGAGTATTGTGATGAGGGTGAAGTGAACAATAGTAGTAATAATAATAATGGGCAGCACCCAATTCCAAGAAGGTGCACACATTGTCTGGCTCAGAGGACCCCACAGTGGAGGGCAGGACCATTGGGTCCAAAGACACTATGCAATGCATGTGGTGTGAGGTACAAGTCTGGAAGGTTGTTGCCCGAATATAGGCCAGCCAAGAGCCCTACTTTTGTTAGCTATTTGCATTCAAATTCACACAAGAGAGTCATGGAGATGAGAATGAGTGTTCTATCTACTCAGAAGTAG 774 0.4548 MDMDVCRNVSVSSECQQELPTLDDLFSHQNMEEDFGMEWLSVFVEDCFSSKPSCLLAPPGVETTSPSTKPSSTMQRPQQSYCPLQNFSVPGKARSKRKRLSAPRTKHTLSTWSNNFSTQVLSSDPPLLKQAYWLADSELIVPKKKDEQEVKVDIVVRKEKLGEYCDEGEVNNSSNNNNGQHPIPRRCTHCLAQRTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPAKSPTFVSYLHSNSHKRVMEMRMSVLSTQK 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7805g00003 257 MobiDBLite consensus disorder prediction 58 81 - -
Vium7805g00003 257 Pfam GATA zinc finger 187 221 IPR000679 GO:0006355|GO:0043565
Vium7805g00003 257 Gene3D - 177 257 IPR013088 GO:0006355|GO:0008270
Vium7805g00003 257 CDD ZnF_GATA 186 233 IPR000679 GO:0006355|GO:0043565
Vium7805g00003 257 ProSitePatterns GATA-type zinc finger domain. 187 212 IPR000679 GO:0006355|GO:0043565
Vium7805g00003 257 SMART GATA_3 181 235 IPR000679 GO:0006355|GO:0043565
Vium7805g00003 257 MobiDBLite consensus disorder prediction 60 81 - -
Vium7805g00003 257 ProSiteProfiles GATA-type zinc finger domain profile. 185 217 IPR000679 GO:0006355|GO:0043565
Vium7805g00003 257 PANTHER GATA TRANSCRIPTION FACTOR 20 254 - -
Vium7805g00003 257 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 183 245 - -
Vium7805g00003 257 FunFam GATA transcription factor 175 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7805g00003 Vium-Chr7805 5202 6861 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7805g00003 37 249 C2C2-Gata Transcription Factor Family AT4G32890 40.455 8.62e-42 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vium7805g00003 GATA 1.1e-14 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7805g00003 - - pvu:PHAVU_004G079200g 475.322