Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7805g00002 ATGGAAGAGGATTTTGGCATGGAATGGTTGTCTGTGTTTGTGGAAGACTGTTTTTCCAGTAAGCCAAGTTGCCTCTTGGCACCCCCTGGTGTTGAAACCACGAGCCCTAGCACCAAGCCTTCAAGCACAATGCAAAGACCCCAACAAAGTTACTGTCCTCTGCAGAATTTTTCTGTGCCAGGGAAAGCCAGGAGCAAGAGGAAGAGGCTATCAGCACCAAGGACAAAACACACTCTAAGCACTTGGTCAAATAATTTCAGTACTCAAGTGTTGAGTTCTGACCCTCCTCTCTTGAAACAAGCCTATTGGTTGGCTGATAGTGAACTCATTGTCCCAAAGAAGAAGGATGAGCAAGAAGTGAAAGTGGATATTGTGGTTAGGAAGGAGAAACTGGGGGAGTATTGTGATGAGGGTGAAGTGAACAATAGTAGTAATAATAATAATGGGCAGCACCCAATTCCAAGAAGGTGCACACATTGTCTGGCTCAGAGGACCCCACAGTGGAGGGCAGGACCATTGGGTCCAAAGACACTATGCAATGCATGTGGTGTGAGGTACAAGTCTGGAAGGTTGTTGCCCGAATATAGGCCAGCCAAGAGCCCTACTTTTGTTAGCTATTTGCATTCAAATTCACACAAGAGAGTCATGGAGATGAGAATGAGTGTTCTATCTACTCAGAAGTAG 684 0.4576 MEEDFGMEWLSVFVEDCFSSKPSCLLAPPGVETTSPSTKPSSTMQRPQQSYCPLQNFSVPGKARSKRKRLSAPRTKHTLSTWSNNFSTQVLSSDPPLLKQAYWLADSELIVPKKKDEQEVKVDIVVRKEKLGEYCDEGEVNNSSNNNNGQHPIPRRCTHCLAQRTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPAKSPTFVSYLHSNSHKRVMEMRMSVLSTQK 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7805g00002 227 PANTHER GATA TRANSCRIPTION FACTOR 7 224 - -
Vium7805g00002 227 ProSitePatterns GATA-type zinc finger domain. 157 182 IPR000679 GO:0006355|GO:0043565
Vium7805g00002 227 FunFam GATA transcription factor 145 227 - -
Vium7805g00002 227 Gene3D - 147 227 IPR013088 GO:0006355|GO:0008270
Vium7805g00002 227 CDD ZnF_GATA 156 203 IPR000679 GO:0006355|GO:0043565
Vium7805g00002 227 SMART GATA_3 151 205 IPR000679 GO:0006355|GO:0043565
Vium7805g00002 227 Pfam GATA zinc finger 157 191 IPR000679 GO:0006355|GO:0043565
Vium7805g00002 227 MobiDBLite consensus disorder prediction 30 56 - -
Vium7805g00002 227 MobiDBLite consensus disorder prediction 28 76 - -
Vium7805g00002 227 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 152 215 - -
Vium7805g00002 227 ProSiteProfiles GATA-type zinc finger domain profile. 155 187 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7805g00002 Vium-Chr7805 5202 7046 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7805g00002 7 219 C2C2-Gata Transcription Factor Family AT4G32890 40.455 5.43e-42 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vium7805g00002 GATA 8.9e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7805g00002 - - pvu:PHAVU_004G079200g 428.713